View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_17 (Length: 243)
Name: NF12833_low_17
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 16694970 - 16694825
Alignment:
| Q |
19 |
gttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataattt |
118 |
Q |
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| T |
16694970 |
gttattttatctcttcaacttacaaagtcaaacttaaattgttacaacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataattt |
16694871 |
T |
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| Q |
119 |
ctttgttgaacttaatttgtatgtgttgttaagaataaattatgttg |
165 |
Q |
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| T |
16694870 |
ctttgttgaacttaatttgtatgtgttgtt-agaataaattatgttg |
16694825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 16694596 - 16694531
Alignment:
| Q |
167 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
232 |
Q |
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| T |
16694596 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
16694531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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