View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_2 (Length: 686)
Name: NF12833_low_2
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 321 - 669
Target Start/End: Original strand, 19506874 - 19507222
Alignment:
| Q |
321 |
ttaattattttttcttagtgtctacccgcaaaatgcacaannnnnnnaagtatataaaaatggtagggttcgaacttacaccttaagatacatattaaat |
420 |
Q |
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| T |
19506874 |
ttaattattttttcttagtgtctacccgcaaaatgcacaatttttttaagtttataaaagtggtagggttcgaacttacaccttaagatacatattaaat |
19506973 |
T |
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| Q |
421 |
gtattttttgcgtttttaccatctgaatgacacctacgnnnnnnnttaactttgtttggtttcgtgaagaaaattaaactannnnnnnctgttatatatt |
520 |
Q |
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| T |
19506974 |
gtattttttgcgtttttaccatctgaatgatacctacgaaaaaaaataactttgtttggtttggtgaagaaaattaaactatttttttccattatatatt |
19507073 |
T |
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| Q |
521 |
ataaagtacgaagttttcactacatgattaaactcaaattaaacttactaattaatttgtgttttaacagggattagagctagtgaatgcagcattttgt |
620 |
Q |
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| T |
19507074 |
ataaagtacgaagttttcactacatgattaaactcaaattaaacttactaattaatttgtgttttaacagggattagagctagtgaatgcagcattttgt |
19507173 |
T |
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| Q |
621 |
cgctattttcaaagtacatgttttgatatcagcaggaaggtccatactg |
669 |
Q |
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| T |
19507174 |
cgctattttcaaagtacatgttttgatatcagcaggaaggtccatactg |
19507222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 19506517 - 19506731
Alignment:
| Q |
15 |
cagagactacagcttcagatattttacggcaaaaccatgttttgacaaggaaggaaaagccatcaaagttggtaaagttacagtattggaaaacatgaat |
114 |
Q |
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| T |
19506517 |
cagagactactgcttcagatattttacggcaaaaccatgttttgacaaggaaggaaaagccatcaaagttggtaaagttacggtattggaaaatatgaat |
19506616 |
T |
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| Q |
115 |
agcttccaaagatacatgtacattcgttacttgcttccattaaaggttatttctaatcctcatttacttatatttttccattcatgcaacacttggcttt |
214 |
Q |
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| T |
19506617 |
agcttccaaagatacatgtacattcgttacttgcttccattaaaggttatttctaatcctcatttacttatatttttccattcatgcaacacttgacttt |
19506716 |
T |
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| Q |
215 |
tattaaaactttgtc |
229 |
Q |
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| T |
19506717 |
tattaaaactatgtc |
19506731 |
T |
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