View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12833_low_20 (Length: 240)
Name: NF12833_low_20
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34430123 - 34429901
Alignment:
| Q |
1 |
ttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaagatttgtaactaaatgatctatcattagaaataattcacataaaagaccgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34430123 |
ttcagaggattcttcaaatgtctaatacaataaacaaaaaatgagaaagaattgtaactaaatgatctatcattagacataattcacataaaagaccgta |
34430024 |
T |
|
| Q |
101 |
aaatccacctgagcactgcttagaagagcgcccgaaatgagcggaggcaattgtcgaagctgatcaatcatcaaagctaccaaaggactaacaacaagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34430023 |
aaatccacctgagcactgcttagaagagcgcccgaaatgagcggaggcaattgtcgaagctgatcaatcatcaaagctaccaaaggactaacaacaagcg |
34429924 |
T |
|
| Q |
201 |
taatcccaggcaaaatcaacgca |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34429923 |
taatcccaggcaaaatcaacgca |
34429901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University