View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_21 (Length: 237)
Name: NF12833_low_21
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_21 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 13111174 - 13111402
Alignment:
| Q |
15 |
atcactattgtcttacatcatttttaaaattgcagcatgtaatattcttcattcattcccttcactttcgttttgcctgcttctctcttgccatttc--- |
111 |
Q |
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| T |
13111174 |
atcactattgtcttacatcatttttaaaattgcagcatataatattcttcattcattcccttcactttccttttgcctgcttctctcttgccgtttcgtc |
13111273 |
T |
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| Q |
112 |
---ccattgccataacaatttctttcttctttcacatgtgatttttcagatcttggtcgatgacatttaaatgtatcaaatctaatttttaattaaaaca |
208 |
Q |
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| T |
13111274 |
ttcccattgccataacaatttctttcttctttcaaaagtgatttttcagatcttggtcgatgaaatttaaatgtatcaaatctaatttttaattagaaca |
13111373 |
T |
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| Q |
209 |
aaccgtaaattaattaaatagtatgaatc |
237 |
Q |
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| T |
13111374 |
aaccgtaaattaattaaatagtatgaatc |
13111402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 150983 - 150755
Alignment:
| Q |
15 |
atcactattgtcttacatcatttttaaaattgcagcatgtaatattcttcattcattcccttcactttcgttttgcctgcttctctcttgccatttc--- |
111 |
Q |
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||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
150983 |
atcactattgtgttacatcatttttaaaactgcagcatataatattcttcattcattcacttcactttccttttgcctgcttctctcttgccgtttcgtc |
150884 |
T |
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| Q |
112 |
---ccattgccataacaatttctttcttctttcacatgtgatttttcagatcttggtcgatgacatttaaatgtatcaaatctaatttttaattaaaaca |
208 |
Q |
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| T |
150883 |
ttcccgttgccataacgatttctttcttctttcaaatgtgatttttcaatacttggtcgatgaaattttaatgtatcaaatttaatttttaattaaaaca |
150784 |
T |
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| Q |
209 |
aaccgtaaattaattaaatagtatgaatc |
237 |
Q |
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| T |
150783 |
aaccgtaaattaattaaatagaatgaatc |
150755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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