View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_22 (Length: 236)
Name: NF12833_low_22
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2969532 - 2969740
Alignment:
| Q |
1 |
atctcctgttccaatgtcacatgtgttgccttccgatatgtccgtcaaagcattaacaacctgttgtgatcacggaaatgtaatacttaaaagtcgggtc |
100 |
Q |
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| T |
2969532 |
atctcctgttccaatgtcacatgtgttgccttccgatatgtccgtcaaagcattaacaacctgttgtgatcacggaaaagtaatacttaaaaatccggtc |
2969631 |
T |
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| Q |
101 |
atgctttgttgatcatgaatgtcatatgtaaggaaaagatgatatatgtttacttagctatgcaattaagtcattaatatttgtttacttaccgcaacca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2969632 |
atgctttgttgatcatgaatgttatatgtaaggaaaagatgatatatgtttacttagctatgcaattaagtcattaatatttgtttacttaccgcaacca |
2969731 |
T |
|
| Q |
201 |
tacttagtc |
209 |
Q |
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||||||||| |
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| T |
2969732 |
tacttagtc |
2969740 |
T |
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