View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12833_low_3 (Length: 604)
Name: NF12833_low_3
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 25551449 - 25552027
Alignment:
| Q |
18 |
gttgcaatgtcccacaagtttaagataagcaaactctttgtctttcnnnnnnnnnnnngtatatcagacgtaattggacttatcatacgcctccaattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25551449 |
gttgcaatgtcccacaagtttaagataagcaaactccctgtctttcaaaaagaaaaaagtatatcaggcgtaattggacttatcatacgcctccaattat |
25551548 |
T |
|
| Q |
118 |
tttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgttctagtgtactgagattcgtatttaactttgtttaaaatcagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25551549 |
tttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgttctagtgtactgagattcgtatttaactttgtttaaaatcagc |
25551648 |
T |
|
| Q |
218 |
gtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgcgcatccaatcaacgtgctcataaactaaaacgcaaacattaaacat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25551649 |
gtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgcgcatccaatcaacgtgctcataaactaaaacgcaaacattaaacat |
25551748 |
T |
|
| Q |
318 |
gtaatcgtacaaatctaaatcatgatttcgtagttaggtctaataccatcgaaggaaaatcacaaatatagatagcgcataatcacaatatacattaaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25551749 |
gtaatcgtacaaatctaaatcatgatttcgtagttaggtctaataccatcgaaggaaaatcacaaatatagatagcgcataatcacaatatacattaaaa |
25551848 |
T |
|
| Q |
418 |
tttcctttgtaatgaaaaattatgaatggttatgaatcaccgattgaatgattacatgttgtagcctagaacaattcatcgtcaaaggtgagatggatca |
517 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25551849 |
tttcccttgtaatgaaaaattatgaatggttatgaatcaccgattgaatgattacatgttgtagcctagaacaattcatcgtcaaaggtgagatggatca |
25551948 |
T |
|
| Q |
518 |
cgaacgctacatgaacgcaaagtctctactcaatccacatgaacataattttttgctaatcatgttagcagtgaacgag |
596 |
Q |
| |
|
||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25551949 |
cgaacactacatgaatgtaaagtctccactcaatccacatgaacataattttttgctaatcatgttagcagtgatcgag |
25552027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 78 - 354
Target Start/End: Original strand, 25550831 - 25551110
Alignment:
| Q |
78 |
atatcagacgtaattggacttatcatacgcctccaattattttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgttct |
177 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
25550831 |
atatcaggcgtaactggacttatcctacgcctccaactattttaataaaatcaaataacccttaatatttgatttgaaaagttcca-----atattttcc |
25550925 |
T |
|
| Q |
178 |
agtgtactg--agattcgtatttaactttgtttaaaatcagcgtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgcgcat |
275 |
Q |
| |
|
|||| |||| |||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
25550926 |
agtggactgtgagattcatatttaact--gttttaaatcagtgtagactaataaaataaaactcaattatttaaaagaacataccaattcaaatgcacat |
25551023 |
T |
|
| Q |
276 |
ccaatcaacgtgctcataaac--------taaaacgcaaacattaaacatgtaatcgtacaaatctaaatcatgatttcgtagttag |
354 |
Q |
| |
|
|||| |||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25551024 |
ccaaccaacatgctcataagcctcattgacaaaacacaaacattaaatatgtaatcgtacaaatctaaatcatagttttgtagttag |
25551110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University