View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_4 (Length: 490)
Name: NF12833_low_4
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 38922303 - 38921960
Alignment:
| Q |
21 |
atcagtgtatgcaagtgctatagccaacagggtgattgatgttatggacacacaatatgcagctggtcttccacatataagtaggctgtagtcaaaatca |
120 |
Q |
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| T |
38922303 |
atcagtgtatgcaagtgctatagccaacagggtgattgatgttatggacacacaatatgcagctggtcttccacatataagtaggctgtagtcaaaatca |
38922204 |
T |
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| Q |
121 |
ggcactaaattgtctgtgtcaattggtactgacaggaatgagacattttagaaaaataatgatgataatagttgtagtaagaatttcatagggaacatcc |
220 |
Q |
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| T |
38922203 |
ggcactaaattgtctgtatcaattggtactgacaggaatgagacattttagaaaaataatgatgataatagttgtagtaagaatttcatagggaacatcc |
38922104 |
T |
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| Q |
221 |
aagagatgctaaaatttataagttcaatagttcctatctgtgtgtgnnnnnnnnnatttggtactttctggttcatgacatagtttgatcaactctgatg |
320 |
Q |
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| T |
38922103 |
aagagatgctaaaatttataagttcaatagttcctatctgtgtgtgtttttttttatttggtactttctggttcatgacatagtttgatcaattctgatg |
38922004 |
T |
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| Q |
321 |
caaaattattgtcaggatattttatatgggataattaatgttag |
364 |
Q |
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| T |
38922003 |
caaaattattgtcaggatattttatatgggataattaatgttag |
38921960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 38908681 - 38908456
Alignment:
| Q |
22 |
tcagtgtatgcaagtgctatagccaacagggtgattgatgttatggacacacaatatgcagctggtcttccacata----taagtaggctgtagtcaaaa |
117 |
Q |
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| T |
38908681 |
tcagtgcatgcaagtgctatagcaaacagggtgattgatgttctggacacacaatatgcagcagttgtcccacataataggatgtaggttgtagtcagta |
38908582 |
T |
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| Q |
118 |
tcaggcactaaattgtctgtgtcaattggtactgacaggaatgagacattttagaaaaataatgatgataatagttgtagtaagaatttcatagggaaca |
217 |
Q |
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| T |
38908581 |
tcagggaccaaa---tcactattaattagtactgacattaatgaaacaatttagagaaataatgatgatagtagttataataatactttcataggaaaca |
38908485 |
T |
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| Q |
218 |
tccaagagatgctaaaatttataagttca |
246 |
Q |
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| T |
38908484 |
tctaggagaagctaaaatttataagttca |
38908456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 364
Target Start/End: Complemental strand, 38908428 - 38908343
Alignment:
| Q |
279 |
tggtactttctggttcatgacatagtttgatcaactctgatgcaaaattattgtcaggatattttatatgggataattaatgttag |
364 |
Q |
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| T |
38908428 |
tggtactttgtggttcataacatagtttaatcacttccgatgcaaaattgttgtcgggatttttaatttggaatagttaattttag |
38908343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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