View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12833_low_9 (Length: 377)
Name: NF12833_low_9
Description: NF12833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12833_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 53 - 363
Target Start/End: Complemental strand, 10688446 - 10688144
Alignment:
| Q |
53 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttagatagtgaacccagaatgtgaatctga |
152 |
Q |
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| T |
10688446 |
aagaagtgaatgatgatgaagaaggtggacgaagtgaatgaaaattcatcatttttctcttttggagtttttaggtagtgaacccagaatgtgaatctga |
10688347 |
T |
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| Q |
153 |
ctgatcaaaaagtagtatttataggcatagaaaattattactattactttgagaaaacatttttcagaaaagttggggaatgaggaaagtgtatggaaaa |
252 |
Q |
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| T |
10688346 |
ttgatcaaaaagtagtatttataggcatagaaaattattactattactatgagaaaacatttttcagaaaagttggggaat--------tgtatggaaaa |
10688255 |
T |
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| Q |
253 |
tatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatcc |
352 |
Q |
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| T |
10688254 |
tatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaatattcatagatgc |
10688155 |
T |
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| Q |
353 |
ttgatcaactc |
363 |
Q |
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| T |
10688154 |
ttgatcaactc |
10688144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 5445011 - 5444855
Alignment:
| Q |
208 |
aacatttttcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaact |
307 |
Q |
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| T |
5445011 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaact |
5444912 |
T |
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| Q |
308 |
tgaactgaggtt-cttgatttggcaatttccaatattcatagatccttgatcaactc |
363 |
Q |
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| T |
5444911 |
tggactgaggttgagggatttggcaatttcccatattcattgatccttgatcaactc |
5444855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 5445069 - 5445016
Alignment:
| Q |
128 |
tagtgaacccagaatgtgaatctgactgatcaaaaagtagtatttataggcata |
181 |
Q |
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| T |
5445069 |
tagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcata |
5445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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