View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_high_1 (Length: 656)
Name: NF12834_high_1
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 12 - 640
Target Start/End: Complemental strand, 46630942 - 46630318
Alignment:
| Q |
12 |
cacagacatatacctattgagctataaacctattcctccaattcacaaaaaagttaattagaacaacaagaaaaagaaaatggaagtgttggtgcatagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46630942 |
cacagacatatacctattgagctataaacctattcctccaattcacaaaaaagttac----aacaacaagaaaaagaaaatggaagtgttggtgcatagc |
46630847 |
T |
|
| Q |
112 |
cctagagagagtcctaacatagatcatttcgatttcaatagaatttcaccttatctaagtgcaccttcttcaccaaaacgatttggtgaagatttttact |
211 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46630846 |
cccagagagagtcctaacatagatcatttcgatttcaatagaatttcaccttatctaagtacaccttcttcaccaaaacgatttggtgaagatttttact |
46630747 |
T |
|
| Q |
212 |
taagtgcacccactagcccatcaaggtttttctctcaatttgaagatgaagatgctggatttgcgttttctgttcatagagaatcagattcatcacctcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630746 |
taagtgcacccactagcccatcaaggtttttctctcaatttgaagatgaagatgctggatttgcgttttctgttcatagagaatcagattcatcacctcg |
46630647 |
T |
|
| Q |
312 |
ttcagctgaagaacttttccatggtggtgtaatcaagcctttagaatctgctaaatctcctcttctatctccaaatagagtcaaaaaatctccaatagct |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630646 |
ttcagctgaagaacttttccatggtggtgtaatcaagcctttagaatctgctaaatctcctcttctatctccaaatagagtcaaaaaatctccaatagca |
46630547 |
T |
|
| Q |
412 |
aaaggtaaaaaagctataatggaagctttttcacctaaaaataagaaagattcatctcttggtaatggagaaagaagaggtagagatagaacaccagctt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630546 |
aaaggtaaaaaagctataatggaagctttttcacctaaaaataagaaagattcatctcttggtaatggagaaagaagaggtagagatagaacaccagctt |
46630447 |
T |
|
| Q |
512 |
ctgaattttcttcatcaaattctggtcgtagagttacacgttcacattctccatttagaacatcacaatacacatgggttgaagaacaacaacagcataa |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630446 |
ctgaattttcttcatcaaattctggtcgtagagttacacgttcacattctccatatagaacatcacaatacacatgggttgaagaacaacaacagcataa |
46630347 |
T |
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| Q |
612 |
acaatcacagattaataaagaggattctg |
640 |
Q |
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| T |
46630346 |
acaatcacagattaataaagaggattctg |
46630318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 6246295 - 6246354
Alignment:
| Q |
156 |
ttcaccttatctaagtgcaccttcttcaccaaaacgatttggtgaagatttttacttaagtgc |
218 |
Q |
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|||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||||||| |
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| T |
6246295 |
ttcaccatatctaagtcctccatcttcaccaaaacgttttggtgaa---ttttacttaagtgc |
6246354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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