View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_high_10 (Length: 216)
Name: NF12834_high_10
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 20576842 - 20577032
Alignment:
| Q |
9 |
gagtgagaagaagaaggaagttacttaggccaagttgaaacaccaagctcaatgagtttggattgggatggattcttctctatcttgactccaaatactt |
108 |
Q |
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| T |
20576842 |
gagtgtgaagaagaaggaagttacttaggccaagttgaaacaccaagctcaatgagtttggattgggatggattcttctctatcttgactccaaatactt |
20576941 |
T |
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| Q |
109 |
cataggttgccatggaagtttcctttggcatgagaatgagaaacaagatggagagaatgagaggaacgaaaatgatgagtgataaacgttg |
199 |
Q |
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| T |
20576942 |
cataggtcgccatggaagtttcctttggcatgagaatgagaaacaagatggagagaatgagaggaacgaaaatgatgattgataaacgttg |
20577032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 637198 - 637051
Alignment:
| Q |
29 |
ttacttaggccaagttgaaacaccaagctcaatgagtttggattgggatggattcttctctatcttgactccaaatacttcataggttgccatggaagtt |
128 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |
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| T |
637198 |
ttacttaggccaagttgaaacactaagctcaatgagtttagattttgatggattcttctctatcttcactccaaatacttcataggctgccatagcagt- |
637100 |
T |
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| Q |
129 |
tcctttggcatgagaatgagaaacaagatggagagaatgagaggaacgaaaa |
180 |
Q |
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| T |
637099 |
---tttggcataagagctaaaaacaagagggggagaatgagaggaatgaaaa |
637051 |
T |
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