View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_high_4 (Length: 350)
Name: NF12834_high_4
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 31127817 - 31127487
Alignment:
| Q |
4 |
gcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127817 |
gcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
31127718 |
T |
|
| Q |
104 |
agctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
203 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127717 |
agctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
31127618 |
T |
|
| Q |
204 |
atgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127617 |
atgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagt |
31127518 |
T |
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| Q |
304 |
ctcatactctcgcataaagccgcatgagtgt |
334 |
Q |
| |
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||||||||||| ||||||||||||||||||| |
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| T |
31127517 |
ctcatactctcacataaagccgcatgagtgt |
31127487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 332
Target Start/End: Complemental strand, 31078499 - 31078171
Alignment:
| Q |
4 |
gcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataa |
103 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31078499 |
gcaaccaccctcttcatctgcaagaacgccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactataaggatccatcccaataa |
31078400 |
T |
|
| Q |
104 |
agctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatat |
203 |
Q |
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| |||||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
31078399 |
aactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaatcaagtccccatattttctccgaccttcccatagcatatat |
31078300 |
T |
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| Q |
204 |
atgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagt |
303 |
Q |
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|||||| | ||| ||||||||||||||||| ||||||||||| |||||||| || | | || ||||| ||| |||||| ||||| |||||||| ||| |
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| T |
31078299 |
atgatacgccactctccaccctttcttcacaaaagttccatctggcaaaacatcattgtacgctgcttctttagtatccactggaactggaggataaagt |
31078200 |
T |
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| Q |
304 |
ctcatactctcgcataaagccgcatgagt |
332 |
Q |
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||||||||||||||||| | ||||||||| |
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| T |
31078199 |
ctcatactctcgcataacgacgcatgagt |
31078171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 334
Target Start/End: Complemental strand, 31132504 - 31132195
Alignment:
| Q |
25 |
aagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaa |
124 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||| ||||||| || |||| |||||||||||||||||| ||||||||| |||||||| ||| |
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| T |
31132504 |
aagaacgccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcag |
31132405 |
T |
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| Q |
125 |
cttggctcaaccatctctcaggtcgaaactcagcccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccc |
224 |
Q |
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|| | |||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||| | || ||||||| |
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| T |
31132404 |
ctcgactcaaccacctctcaggtcaaaactcagcccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccc |
31132305 |
T |
|
| Q |
225 |
tttcttcactaaagttccatccggcaaaacgtcgtcagaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcgcataaagcc |
324 |
Q |
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|||||||||||| |||||||| |||||||| || || | || ||||||||| ||||||| | ||| ||||| | || |||||||||||||||||| | |
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| T |
31132304 |
tttcttcactaatgttccatctggcaaaacatcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgat |
31132205 |
T |
|
| Q |
325 |
gcatgagtgt |
334 |
Q |
| |
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|||||||||| |
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| T |
31132204 |
gcatgagtgt |
31132195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 38643038 - 38642947
Alignment:
| Q |
1 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
92 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38643038 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38642947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 38655946 - 38655855
Alignment:
| Q |
1 |
ccagcaaccacccttttcatctgcaagaacgccatttcctttcccaaacacacccttggcccagcctgaaaaaccgcataactataaggatc |
92 |
Q |
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|||||||| | ||||||||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||| |||| || ||||||| |
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| T |
38655946 |
ccagcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatc |
38655855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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