View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_high_5 (Length: 315)
Name: NF12834_high_5
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 52845077 - 52845381
Alignment:
| Q |
1 |
tgcagctgaaaggacaacagaagaaactgccatgaatgaaacaagctccagatctcatcaaattcttcgattggtattcactttatcactaaattacata |
100 |
Q |
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| T |
52845077 |
tgcagctgaaaggacaacagaagaaactgccatgaatgaaacaagctccagatctcatcaaattcttcgattggtattcactttatcactaaattacata |
52845176 |
T |
|
| Q |
101 |
gcaattgagattaaaatatcgtattttactcctgaattttcccaacatagtaattgagattaaagtaacgtattttactcctgaatttcccaaaataatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52845177 |
gcaattgagattaaaatatcgtattttactcctgaattttcccaacatagtaattgagattaaagtaacgtattttactcctgaatttcccaaaatgatg |
52845276 |
T |
|
| Q |
201 |
agtttatggttttctgcagacacttgaaagcaatcctagtgattttgtaggcactgcaagatctggcgcactttttgccagtgtggtaagatccttaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52845277 |
agtttatggttttctgcagacacttgaaagcaatcctagtgattttgtaggcactgcaagatctggcgcactttttgccagtgtggtaagatccttaccc |
52845376 |
T |
|
| Q |
301 |
ctttg |
305 |
Q |
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||||| |
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| T |
52845377 |
ctttg |
52845381 |
T |
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