View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12834_low_11 (Length: 221)
Name: NF12834_low_11
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 7929970 - 7930163
Alignment:
| Q |
18 |
acgaaagacattcatattgattctttcacttctctttccgttagaatctttcttccggataccgctttaagggatccggaaaagaagaagggatctggaa |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7929970 |
acgaaagacattcacattgattctttcacttctctttccgttagaatctttcttccggataccgctttaagggatccggaaaagaagaagggatctggaa |
7930069 |
T |
|
| Q |
118 |
agagacgtgagaagattttgtcgttgtcttcgttgtcgcagccgccgcagaggagaaatagttatgatccttcttcgccggattttccagtgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7930070 |
agagacgtgagaagattttgtcgttgtcttcgttgtcgcagccgccgcagaggagaaatagttatgatccttcttcgccggattttccggtgaa |
7930163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University