View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_low_8 (Length: 250)
Name: NF12834_low_8
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 31128073 - 31127832
Alignment:
| Q |
9 |
agcagagattgaaataatttccattaaataataaaagtcataattttattcttaatttagacgagaaatgtaaactacaaaattacctacacaaccttag |
108 |
Q |
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| T |
31128073 |
agcacagattgatataatttccattaaataataaaagtcataattttattcttaatttagacgagaaatgtaaactacaaaattacctacacaaccttag |
31127974 |
T |
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| Q |
109 |
tttatgcataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaact |
208 |
Q |
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| T |
31127973 |
tttatgcataaaataagatttcattcatttgtgctgccacgcttctcaatctttaccaggaagccacctttcattatcgaagtaaggtgtgcagcgaact |
31127874 |
T |
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| Q |
209 |
ctggctcaacccctttatccattgcaggaaccaccctaaact |
250 |
Q |
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| T |
31127873 |
ccggctcaacccctttatccattgcaggaaccaccctaaact |
31127832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 31078616 - 31078514
Alignment:
| Q |
148 |
cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa |
247 |
Q |
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| T |
31078616 |
cgcttctcaattcttaccgagaagccacctttcatcaatgaggtaaggtgtgcaatgtactccggctcaacccctttatccattgcaggaaccaccctaa |
31078517 |
T |
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| Q |
248 |
act |
250 |
Q |
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| T |
31078516 |
act |
31078514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 31132645 - 31132543
Alignment:
| Q |
148 |
cgcttctcaatctttaccgggaagccacctttcattatcgaagtaaggtgtgcagcgaactctggctcaacccctttatccattgcaggaaccaccctaa |
247 |
Q |
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| T |
31132645 |
cgcttcttgatctttaccggaaagccacctttcataattgaagtaagatgtgaatcaaacactggttcaaccccttcatccatcgctggaagcaacctaa |
31132546 |
T |
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| Q |
248 |
act |
250 |
Q |
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||| |
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| T |
31132545 |
act |
31132543 |
T |
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