View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12834_low_9 (Length: 239)
Name: NF12834_low_9
Description: NF12834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12834_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40440272 - 40440494
Alignment:
| Q |
1 |
tgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataactttcttatcagcttcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40440272 |
tgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataactttcttatcagcttcatc |
40440371 |
T |
|
| Q |
101 |
caacattcacaaaatcaaatccactcttaatctcaacccatccatccaaattattccacttcagttcccaaatggcataaccaacactgctgaattgcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40440372 |
caacattcacaaaatcaaatccactcttaatctcaacccatccatccaaattattccacttcagttcccaaatggcataaccaacactgctgaattgcca |
40440471 |
T |
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| Q |
201 |
cctcacttagctggaaatctcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40440472 |
cctcacttagctggaaatctcat |
40440494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 40443295 - 40443459
Alignment:
| Q |
1 |
tgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataactttcttatcagcttcatc |
100 |
Q |
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|
||||||||||||||| ||||||||| || |||||||||||||||||||| ||||| |||| ||||| ||||||| | |||||||||||||||||||||| |
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| T |
40443295 |
tgtttccattccttgtatttggtcacattagtccttttgttcaattatcaaacaaattattctctcatggagttcgcgtaactttcttatcagcttcatc |
40443394 |
T |
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| Q |
101 |
caacattcacaaaatcaaatccactcttaatctcaacccatccatccaaattattccacttcagt |
165 |
Q |
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||||||| | ||||||| | || ||||||||||| | |||||| | ||||| |||||||||| |
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| T |
40443395 |
aaacattcctagaatcaaaacagcttttaatctcaactcgtccatcaacattatcccacttcagt |
40443459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 21840007 - 21840169
Alignment:
| Q |
1 |
tgtttccattccttgcatttggtcatataagtccttttgttcaattatccaacaagctattttctcaaggagttcacataactttcttatcagcttcatc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||| |||| ||||| ||| ||||||| | ||||| ||| ||||| | |
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| T |
21840007 |
tgtttcccttcctagcatttggtcacattagtccatttgtgcaattatccaacaagttattctctcatggaattcacatctcattcttgtcaccttcagc |
21840106 |
T |
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| Q |
101 |
caacattcacaaaatcaaatccactcttaatctcaacccatccatccaaattattccacttca |
163 |
Q |
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||||||| ||||||||||| ||| | ||||||||||| || ||||| || ||||| ||||| |
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| T |
21840107 |
taacattccaaaaatcaaatcaactttcaatctcaacccttcaatccatatcattccccttca |
21840169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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