View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12835_high_1 (Length: 957)
Name: NF12835_high_1
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_high_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 861; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 18 - 946
Target Start/End: Original strand, 41523007 - 41523935
Alignment:
| Q |
18 |
ttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41523007 |
ttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcgaaagaatg |
41523106 |
T |
|
| Q |
118 |
atcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
41523107 |
atcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccac |
41523206 |
T |
|
| Q |
218 |
tagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523207 |
tagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctacaatcagttctctaggaacatctctccta |
41523306 |
T |
|
| Q |
318 |
ttctagtaaagttactaatgtttttgggctcctgaagcacagccctgtctcaaggctgaaatttgtgcttcgcctcattaatttatcttccaaagtagct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41523307 |
ttctagtaaagttactaatgtttttgggctcctgaagcgcagccctgtctcaaggctgaaattagtgcttcgcctcattaatttatcttccaaagtagct |
41523406 |
T |
|
| Q |
418 |
ttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtccattgcatatggcgaagaaaaacctccctagaaccaaaatttatttgaggtttta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523407 |
ttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtcaattgcatatggtgaagaaaaacctccctagaaccaaaatttatttgaggtttta |
41523506 |
T |
|
| Q |
518 |
cagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatagaataaaga |
617 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
41523507 |
cagttcatgtcaacactacttccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatagaataaaga |
41523606 |
T |
|
| Q |
618 |
tgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||| |
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|
| T |
41523607 |
tgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacataaattcaat |
41523706 |
T |
|
| Q |
718 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatgaaccttgcacatccttgttcc |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523707 |
atttatcaagtaacattaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatgaaccttgcacatccttgttcc |
41523806 |
T |
|
| Q |
818 |
ctttgctctgcggttgagtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcagcctccacaacagtgtcatttccgaa |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
41523807 |
ctttgctctgcggttgagtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcaacctccacaacagtgtcatttccgaa |
41523906 |
T |
|
| Q |
918 |
ctcatcgtcaagaaaatcatcttcatctc |
946 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41523907 |
ctcatcgtcaagaaaatcatcttcatctc |
41523935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 41514043 - 41514390
Alignment:
| Q |
18 |
ttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcaaaagaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41514043 |
ttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatactcaacactttccaagagataagttcctaaagaggtcaaaagaatg |
41514142 |
T |
|
| Q |
118 |
atcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactacctaccac |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
41514143 |
atcattcacaccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataactagctcccac |
41514242 |
T |
|
| Q |
218 |
tagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacatctctccta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41514243 |
tagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctagaatcagttctctaggaacatctctccta |
41514342 |
T |
|
| Q |
318 |
ttctagtaaagttactaatgtttttgggctcctgaagcacagccctgt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514343 |
ttctagtaaagttactaatgtttttgggctcctgaagcacagccctgt |
41514390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 619 - 946
Target Start/End: Original strand, 41514656 - 41514984
Alignment:
| Q |
619 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
717 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
|
| Q |
718 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatgaaccttgcacatccttgttcc |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatgaaccttgcacatccttgttcc |
41514855 |
T |
|
| Q |
818 |
ctttgctctgcggttgagtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcagcctccacaacagtgtcatttccgaa |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
41514856 |
ctttgctctgcggttgagtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcagcctcctcaacagtgtcattttctaa |
41514955 |
T |
|
| Q |
918 |
ctcatcgtcaagaaaatcatcttcatctc |
946 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
41514956 |
ctcatcgtcaagaaaatcctcttcatctc |
41514984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 507 - 619
Target Start/End: Original strand, 41514390 - 41514502
Alignment:
| Q |
507 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaaca |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41514390 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaaca |
41514489 |
T |
|
| Q |
607 |
tagaataaagatg |
619 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41514490 |
tgtaataaagatg |
41514502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 710 - 896
Target Start/End: Original strand, 41469011 - 41469208
Alignment:
| Q |
710 |
aatttaatatttatcaagtaacattaaaaaatgcatatctttataggaataagata--------tgcatgcataatttccatatacctgatgatga---a |
798 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||| || |||||||||| | | ||||||||||||||| |||||||||||||||| | |
|
|
| T |
41469011 |
aattcaatatttataaagtaatattaaaaaatgcataactacataggaataatagaataatagatgcatgcataatttcgatatacctgatgatgatgca |
41469110 |
T |
|
| Q |
799 |
ccttgcacatccttgttccctttgctctgcggttgagtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcagcctc |
896 |
Q |
| |
|
||||| |||||||| ||||||||||| | || ||||||||||||||||||||||| ||||||| | ||||||||||| | |||||||||||||||| |
|
|
| T |
41469111 |
ccttgagcatccttgctccctttgctcggtggctgagtactagcagcaactccaagggtgtgatgatcatcttcatttcttggtaaaggagcagcctc |
41469208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 735 - 913
Target Start/End: Original strand, 41503249 - 41503425
Alignment:
| Q |
735 |
aaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatgaaccttgcacatccttgttccctttgctctgcggttga |
834 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||| | |||||| |||||||||| || || ||| |
|
|
| T |
41503249 |
aaaaattgcatatctttattataataagagatgcatgcacaatttccata--ccagatgatgcaccttgagcgtccttgctccctttgctttgtggctga |
41503346 |
T |
|
| Q |
835 |
gtactagcagcaactccaagagtgtgattagcatcttcatttgtctgtaaaggagcagcctccacaacagtgtcatttc |
913 |
Q |
| |
|
|| || |||| |||||||||||| |||| | || |||||||| | || ||||||||||||||| ||||| ||||||||| |
|
|
| T |
41503347 |
gtgctggcagaaactccaagagtttgatgaacagcttcatttctttgcaaaggagcagcctcctcaacaatgtcatttc |
41503425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 90 - 254
Target Start/End: Original strand, 41507873 - 41508041
Alignment:
| Q |
90 |
ataagttcctaaagaggtcaaaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttc |
189 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| ||| ||||| |||||| | | |||||||||||||| ||| |||||||||||||| ||||| ||| |
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|
| T |
41507873 |
ataagctcctaaagaggaaaaaaggataatcatccacaacatctgtttctaaattctaagtaacctcccctgcatcaccactctcattcagtactctttc |
41507972 |
T |
|
| Q |
190 |
acgacactactgaataactacctaccac----tagaccctggcatctcaaccactttcttgagccttct |
254 |
Q |
| |
|
||| ||||| |||||||| || |||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41507973 |
tcgatgctactaaataactaactcccacccattagaccctgccataacaaccactttcttgagccttct |
41508041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 41517523 - 41517626
Alignment:
| Q |
147 |
aagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta----cctaccactagaccctggcatctcaaccacttt |
242 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| ||| |||| || || |||||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
41517523 |
aagtaacctcccctgcataaccactctcattcagtactatttctcgacgctgctaaataactaactccctcccactagaccctgccataacaaccacttt |
41517622 |
T |
|
| Q |
243 |
cttg |
246 |
Q |
| |
|
|||| |
|
|
| T |
41517623 |
cttg |
41517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 797
Target Start/End: Complemental strand, 41703312 - 41703283
Alignment:
| Q |
768 |
catgcataatttccatatacctgatgatga |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41703312 |
catgcataatttccatatacctgatgatga |
41703283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 2438703 - 2438645
Alignment:
| Q |
196 |
ctactgaataactacctaccactagaccctggcatctcaaccactttcttgagccttct |
254 |
Q |
| |
|
|||||||||||||| || | || |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2438703 |
ctactgaataactaactcctacaagaccctgccatctcaaccactttattgagccttct |
2438645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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