View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_high_26 (Length: 226)
Name: NF12835_high_26
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 15584572 - 15584771
Alignment:
| Q |
13 |
cagagagagaattttctgggtatttgcgagagnnnnnnntgtacacaccgaaatattctgaataggatatatgaatatgtgatcaaacaaaggtttcaca |
112 |
Q |
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| T |
15584572 |
cagagaaagaattttctgggtatttgcgagagaaaaaaatgtacacaccgaaatattctggataggatatatgaatatgtgatcaaacaaaggtttcaca |
15584671 |
T |
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| Q |
113 |
ctaaattaatacatttagaccacactctggttcttgtggtttaataaatatatatcatatacacatggcttaaacttaccatcaattacgtgttatattt |
212 |
Q |
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| T |
15584672 |
ctaaattaatacatttagaccacactctggttcttgtggtttaagaaatatatatcatatacacgtggcttaaacttaccatcaattacgtgttatattt |
15584771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 15581654 - 15581816
Alignment:
| Q |
61 |
cgaaatattctgaataggatatatgaatatgtgatcaaacaaaggtttcacactaaattaatacatttaga-----------ccacactctggttcttgt |
149 |
Q |
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| T |
15581654 |
cgaaattttctggataggatatatgaatatgtgatcaaatgaaggtttcacactaaattaaaacatttagacttggtctcagctacactctgtttcttgt |
15581753 |
T |
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| Q |
150 |
ggtttaataaatatatatcatatacacatggcttaaacttaccatcaattacgtgttatattt |
212 |
Q |
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| T |
15581754 |
ggtttaagaaatatatattatatacatgtggtataaacttaccatcaattacgtgatatattt |
15581816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 15550137 - 15550282
Alignment:
| Q |
52 |
tgtacacaccgaaatattctgaataggatatatgaatatgtgatcaaacaaaggtttcacactaaattaatacatttagaccacactctggttcttgtgg |
151 |
Q |
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| T |
15550137 |
tgtacacgccgaaattttctggataggatatatgaatatgtgatcaaacgaaggtttcacactaaa--aat---------gtacactctgtttcttgtgg |
15550225 |
T |
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| Q |
152 |
tttaataaatatatatcatatacacatggcttaaacttaccatcaattacgtgttatattt |
212 |
Q |
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| T |
15550226 |
ttcaagaa----atatcatatacacgtggcttaaacttaccatcaattacgtggtatattt |
15550282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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