View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_high_4 (Length: 486)
Name: NF12835_high_4
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 42616456 - 42615992
Alignment:
| Q |
17 |
agagttcaccatggttggatcattatcttgcctacccatttagaagtagtgagtaaagtttcaatctttgggaaatttgaggcagtggagtggaaaaaga |
116 |
Q |
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| T |
42616456 |
agagttcaccatggttggatcattatcttgcctacccatttagaagtagtgagtaaagtttcaatctttgggaaatttgaggcagtggagtggaaaaaga |
42616357 |
T |
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| Q |
117 |
agggaactatattttggtgggtttggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatatttgaagatcatcatattttgatattga |
216 |
Q |
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| T |
42616356 |
agggaactatattttggtgggtttggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatatttgaagatcatcatattttgatattga |
42616257 |
T |
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| Q |
217 |
gcattannnnnnnagtatttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagtgaggtttgacaaaatgacaatgagatagtt |
316 |
Q |
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| T |
42616256 |
gcattatttttttagtatttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagcgaggtttgacaaaatgacaatgagatagtt |
42616157 |
T |
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| Q |
317 |
gttaaagttagtataggggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgat |
416 |
Q |
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| T |
42616156 |
gttaaagttagtataggggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgat |
42616057 |
T |
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| Q |
417 |
gcatagtagcaattggaagggagtattttggagaataaatggttaggtaattgcttatctgtgct |
481 |
Q |
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| T |
42616056 |
gcatagtagcaattggaagggagtattttggagaataaatggttaggtaattgcttatctgtgct |
42615992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 10208553 - 10208589
Alignment:
| Q |
438 |
agtattttggagaataaatggttaggtaattgcttat |
474 |
Q |
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| T |
10208553 |
agtattttggagaataaatggttaggtaattgcttat |
10208589 |
T |
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