View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_high_5 (Length: 482)
Name: NF12835_high_5
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Complemental strand, 49445933 - 49445483
Alignment:
| Q |
20 |
gaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatgaatatgttgctaagtaaaaacactaatcgaaaggaga |
119 |
Q |
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| T |
49445933 |
gaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatgaatatgttgctacggaaaaacactaatcgaaaggaga |
49445834 |
T |
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| Q |
120 |
tgaaaaacctgattggtgtgtattttcgattatgccttgttttgataattttcccttatttctgagtgtttgtctttctacattgttgtttagatgtatc |
219 |
Q |
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| T |
49445833 |
tgaaaaacctgattggtgtgtattttcgattatgccttgttttggtaattttcccttatttctgagtgtttgtctttctacattgttgtttagatgtatc |
49445734 |
T |
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| Q |
220 |
gccctcatgaaaagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgtcactg |
319 |
Q |
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| T |
49445733 |
gccctcatgacgagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgtcactg |
49445634 |
T |
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| Q |
320 |
cccaaagcttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaatttt |
419 |
Q |
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| T |
49445633 |
cccaaagcttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaatttt |
49445534 |
T |
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| Q |
420 |
attttatcattattaataggccaccgaagattgtattatacctgatgtcca |
470 |
Q |
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| T |
49445533 |
attttatcattattaataggccaccgaagattgtatgatacctgatgtcca |
49445483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 49415800 - 49415894
Alignment:
| Q |
327 |
cttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaattttat |
421 |
Q |
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| T |
49415800 |
cttcaaaatgttgagcttagtgaggtttgttaagtttaggggtcatatctgatttatcatttcttaacatgcctttgtgatttattttattttat |
49415894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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