View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_high_9 (Length: 377)
Name: NF12835_high_9
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 12813707 - 12814054
Alignment:
| Q |
20 |
cattttaaccctatcttctaaacataaaatannnnnnnggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttgacaaaggt |
119 |
Q |
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| T |
12813707 |
cattttaaccctatcttctaaacataaaatatttttttggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttgacaaaggt |
12813806 |
T |
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| Q |
120 |
catatatagtgcatggttagaacgtgttgaaaaacaaaacgccctctttatagaaactgataggtacttataatctaatcatgctctgcaaatctaatat |
219 |
Q |
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| T |
12813807 |
catatatagtgcatggttagaacgtgttgaaaaacaaaacgccccctttatagaaactgataggtacttataatctaatcatgctctgcaaatctattat |
12813906 |
T |
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| Q |
220 |
gtattacaacattcctcaaattttcagttctctttattttattttacgaatcctttgaattgcacttttcatactccttatatggcatacttgtcgtcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12813907 |
gtattacaacattcctcaaattttcagttctctttattttattttacgaatcctttgaattgcacttttcatactccttatatggcatacttaccgtcaa |
12814006 |
T |
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| Q |
320 |
tgatttgatattgctgctcacatgactcaaacttacgggtagtctctg |
367 |
Q |
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| T |
12814007 |
ttatttgatattgctgctcacatgactcaaacttacgggtagtctctg |
12814054 |
T |
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