View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12835_low_12 (Length: 323)

Name: NF12835_low_12
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12835_low_12
NF12835_low_12
[»] chr6 (1 HSPs)
chr6 (19-312)||(31464972-31465265)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 31465265 - 31464972
Alignment:
Q  19 cgaagaaggagcctgtgagctgcaactacgggatgttgatcggagacaaagagaatgatcgaaaaaatgttgttttgcttagaaatgaggacagcgacac 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  31465265 cgaagaaggagcctgtgagctgcaactatgggatgttgatcggagacaaagagaatgatcgaaaaaatgttgttttgcttagaaatgaggacaatgacac 31465166  T
Q  119 atcctcatcagtgatcaccgatgagaataattatggtaacaacgttggtgaaaatcaagttaactcgtgtttcattccatcagatacattgatgttggag 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31465165 atcctcatcggtgatcaccgatgagaataattatggtaacaacgtcggtgaaaatcaggttaactcgtgtttcattccatcagatacattgatgttggag 31465066  T
Q  219 cctccgttgaacccttacatgacaaacttcttggcgtcgagctcagccgagttcatgtgctcaagtcagcccttattgaactactcagattcat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31465065 cctccgttgaacccttacatgacaaacttcttggcgtcgagctcagccgagttcatgtgctcaagtcagcccttattgaactactcagattcat 31464972  T

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