View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12835_low_14 (Length: 314)

Name: NF12835_low_14
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12835_low_14
NF12835_low_14
[»] chr2 (1 HSPs)
chr2 (1-297)||(26203559-26203855)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 26203855 - 26203559
Alignment:
Q  1 ggttgggtgcgtgtgggtcccacttaatctctttcttaaccccc-actttccattttatagactcaccacatcaccgacgcataccaaacactcaaatnn 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||      
T  26203855 ggttgggtgcgtgtgggtcccacttaatctctttcttaaccccccactttccattttatacactcaccacatcaccgacgcataccaagcactcaaataa 26203756  T
Q  100 nnnnntcaattcaactccaactaactccaccagccaccaccatgacgacggcgatctcggtggcggaacccgaactgaaaacatactggtgccacgaatg 199  Q
         |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26203755 aaaaatcaattcaactc-aactaactccaccagccaccaccatgacgacggcgatctcggtggcggaacccgaactgaaaacatactggtgccacgaatg 26203657  T
Q  200 tgacatgagcgtttctttaactacttctcacaccccctctcctctactctgtccccattgcgacactcatttcctcgaactcatggactcaccttttt 297  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26203656 tgacatgagtgtttctttaactacttctctcaccccctctcctctactctgtccccattgcgacactcatttcctcgaactcatggactcaccttttt 26203559  T

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