View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_15 (Length: 312)
Name: NF12835_low_15
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 43188256 - 43187989
Alignment:
| Q |
19 |
agctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgctaactgatgaaagaatcaccaaaaaatacaca |
118 |
Q |
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| T |
43188256 |
agctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgccaactgatgaaagaatcaccaaaaa------- |
43188164 |
T |
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| Q |
119 |
aaatccagcagttgagcaccgagatataagacaagtagctcagtaagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagacc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43188163 |
---tccagcagttgagcaccgagatataagacaagtagctcaataagagtcactaaatgctttctagttgtaacaacgatgatgttgagaaaaacagacc |
43188067 |
T |
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| Q |
219 |
ttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaattgaaagatatcagtg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43188066 |
ttcgacaatcaaatcctctcaaatttcgtctcattgtattccattccatttttcttcatgaactgaaagatatcagtg |
43187989 |
T |
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