View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_16 (Length: 305)
Name: NF12835_low_16
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 3661540 - 3661366
Alignment:
| Q |
120 |
ttgctactgcaccccctcttacccatgctacacccccacaccacaaccac------cccatctttctccacaacacgaccacctcgtacaaaccatttcc |
213 |
Q |
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| T |
3661540 |
ttgctactgcaccccctcttacccatgctacacccccacaccacaaccacaaccaccccatctttctccacaacacgaccacctcatacaaaccatttcc |
3661441 |
T |
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| Q |
214 |
tccgtcctcctttctccacaactcaaccacctcgtacaccacaatctcgtacacgaccacctcgtacacgacaac |
288 |
Q |
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| T |
3661440 |
tccgtcctcctttctccacaactcaaccacctcgtacaccacaatctcgtacacgaccacctcgtacacgacaac |
3661366 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3661659 - 3661603
Alignment:
| Q |
1 |
ccaatagtcccttgagagagcacccgagtaacactcacactcagccgaatggcctct |
57 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
3661659 |
ccaatagtcccttgagagaacatccgagtaacactcacactcagccgaatggcctct |
3661603 |
T |
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