View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_17 (Length: 300)
Name: NF12835_low_17
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 27738191 - 27738466
Alignment:
| Q |
11 |
cacagaaagcaaacacttctgtaatagtactttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacggca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27738191 |
cacagaaagcaaacacttctgtaatagtactttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacggca |
27738290 |
T |
|
| Q |
111 |
aaaaagattgaaaatttgcattttatcttcaaacttca--nnnnnnnatggataaaattacaaacaataccaaaactttctttcgaaaagtacacattac |
208 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27738291 |
gaaaagattgaaaatttgcattttatcttcaaactgcatttttttttatggataaaattacaaacaataccaaaactttctttcgaaaagtacacattac |
27738390 |
T |
|
| Q |
209 |
atgaatagcaagtcactgatttaactgagcagaagcattgaactgtgaaacaaatcacctcaccaattcaattgag |
284 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27738391 |
atgaataacaagtcactgatttaactgagcagaagcattgaactgtgaaacaaatcacctcactaattcaattgag |
27738466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 27726221 - 27726438
Alignment:
| Q |
11 |
cacagaaagcaaacacttctgtaatagtactttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacggca |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
27726221 |
cacaaaaagcaaacacttctgtaatagtactttgaaaacttgaattgtgctacagtggtaccagtactattacttactttcaacaccatatgaaacagca |
27726320 |
T |
|
| Q |
111 |
aaaaagattgaaaatttgcattttatcttcaaacttca-nnnnnnnatggataaaattacaaacaataccaaaactttctttcgaaaagtacacattaca |
209 |
Q |
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| T |
27726321 |
aaaaagattgaaaatttgcattttatcttgaaactgcatttttctgatggataaagttacaaagaataccaaaacttccattc-acaaatacatattaca |
27726419 |
T |
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| Q |
210 |
tgaatagcaagtcactgat |
228 |
Q |
| |
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||| || |||||||||||| |
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| T |
27726420 |
tgagtaacaagtcactgat |
27726438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 269
Target Start/End: Complemental strand, 21250330 - 21250101
Alignment:
| Q |
45 |
aaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatg-----aaacggcaaaaaagattgaaaatttgcattttatctt |
139 |
Q |
| |
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||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| |||| || | ||||||||| ||||||| |||||||| |
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| T |
21250330 |
aaaacttgaattgtgctccaatggtaccggtactattacttacttacaacaccatatgaaataaaacaacacagaagattgaagatttgcaatttatctt |
21250231 |
T |
|
| Q |
140 |
caaact-tcannnnnnnatggataaaattacaaacaataccaaaactttctttcgaaaagtacacattacatgaatagcaagtcactgatttaactgagc |
238 |
Q |
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||| | | |||||||||||||||||||||||| || ||| | ||| |||||| | ||||||||| || ||| || ||||| | ||||| |
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| T |
21250230 |
gaaattgtatttttctgatggataaaattacaaacaatacc-aaccttccattcacaaagtatatattacatgagtaacaattcgttgattccattgagc |
21250132 |
T |
|
| Q |
239 |
agaagcattgaactgtgaaacaaatcacctc |
269 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
21250131 |
agaagcattgaactgtgaaacaaataacctc |
21250101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 21251186 - 21251035
Alignment:
| Q |
41 |
tttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacacc-----atatgaaacggcaaaaaagattgaaaatttgcatttta |
135 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||||||||||||| |||||| | ||||||| || ||||||||||| |||||||||||| |
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| T |
21251186 |
tttgaaaacttgaattgtgctttaatggtaccagtactattacttacttataacaccgtatgaaatgaaacaacataaaagattgaagatttgcatttta |
21251087 |
T |
|
| Q |
136 |
tcttcaaacttca-nnnnnnnatggataaaattacaaacaataccaaaactt |
186 |
Q |
| |
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|||| ||||| || || ||||||||||||| |||||||||||||| |
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| T |
21251086 |
tcttgaaactgcatttttctgattgataaaattacaatcaataccaaaactt |
21251035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 21252100 - 21251999
Alignment:
| Q |
49 |
cttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacgg-----caaaaaagattgaaaatttgcattttatcttcaaa |
143 |
Q |
| |
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|||||||| || | || |||||| |||||||||||||||||||| |||| ||||||| | || |||||||||||||||||||||||||||| ||| |
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| T |
21252100 |
cttgaattttgctccaatggtacaagtactattacttacttacatcaccgtatgaaatgaaacaacacaaaagattgaaaatttgcattttatcttgaaa |
21252001 |
T |
|
| Q |
144 |
ct |
145 |
Q |
| |
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|| |
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|
| T |
21252000 |
ct |
21251999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 21252599 - 21252539
Alignment:
| Q |
45 |
aaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaa |
105 |
Q |
| |
|
||||||||||||||| | || || ||||| ||||||||||| |||||| ||||||||||| |
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| T |
21252599 |
aaaacttgaattgtgctccaatgataccataactattacttatttacaataccatatgaaa |
21252539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 3073344 - 3073469
Alignment:
| Q |
159 |
gataaaattacaaacaataccaaaactttctttcgaaaagtacacattacatgaatagcaagtcactgatttaactgagcagaagcattgaactgtgaaa |
258 |
Q |
| |
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|||||| ||||||||||||||||||||| | | | |||||||| |||||| || || ||||||||||||| | ||||| |||| || ||||||||||| |
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| T |
3073344 |
gataaagttacaaacaataccaaaacttccatccacaaagtacatattacaagagtaacaagtcactgattccattgagccgaagaatcgaactgtgaaa |
3073443 |
T |
|
| Q |
259 |
caaatcacctcaccaattcaattgag |
284 |
Q |
| |
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||||||| |||| ||||||||||| |
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| T |
3073444 |
caaatcaactcattgattcaattgag |
3073469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 3072420 - 3072515
Alignment:
| Q |
38 |
tactttgaaaacttgaattgtgattcagtggtaccagtactattacttacttacaacaccatatgaaacggcaaaaaagattgaaaatttgcattttatc |
137 |
Q |
| |
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|||||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||||||| | ||| |||| |||||||||||||||| |||| |
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| T |
3072420 |
tactttgaaaacttcagttgtgcttctatggtaccagtactattac----ttacaacaccatatgaagcagcagaaaaaattgaaaatttgcattctatc |
3072515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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