View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_2 (Length: 609)
Name: NF12835_low_2
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 22617041 - 22617527
Alignment:
| Q |
1 |
gcataggtcaaattaaaagtctaatttagatatttgtctcctaaannnnnnnnnatgaagttaaaatagaattattttatctactaaaacaa-tagaatt |
99 |
Q |
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| T |
22617041 |
gcataggtcaaattaaaagtctaatttagatatttgtct--ttaattttttttcaagaagataaaatggaattattttatctaccaaaaaaaatagaatt |
22617138 |
T |
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| Q |
100 |
atattattaactaacatttttctgcataagaagtgctaaaggaagtaaagagaagagtataattacataacaagacgattacaaaagcnnnnnnncaagg |
199 |
Q |
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| T |
22617139 |
atattattaactaacatttttctgcataagaagtgctaaaggaagtaaagagaagagtataattacataaccagacaattacaaaaacaaaaaaacaagg |
22617238 |
T |
|
| Q |
200 |
ctaagaaaaacaattacgagcataatagaggattgatccaccagacatggtaattaaaagtaaagttgacatgtttcacctttggtcatccataagaatg |
299 |
Q |
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| T |
22617239 |
ctaagaaaaacaattacgagcataatagaggattgatccaccacacgtggtaactaaaagtaaagttgacatgtttcatctttggccatccataagaatg |
22617338 |
T |
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| Q |
300 |
cggcttaattttgtcaaacaagtggtgaatagtatcatctttattcttgaatattctgttatatcattcttgacaaataatccaaaggaaaactagcnnn |
399 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
22617339 |
tggcttaattttgtcaagcaagtggtgaatagtatcatctttattcttgaatattctgttatatcgctcttgacaaataatccaaaggaaaaccagcaaa |
22617438 |
T |
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| Q |
400 |
nnnngaagctcaagtttggatttcgataaaccacccaaaacactaaattggatcatgtgttccaaaatacggtatggaactaccatggc |
488 |
Q |
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| T |
22617439 |
aaaagaagctcaagtttggatttcaataaaccacccaaaacactaaattgggtcatgtgttccgaaatacggtatggaactaccatggc |
22617527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 22617527 - 22617589
Alignment:
| Q |
526 |
cgaaaaaggtcaaagaagaaaaagatggatcgtgtcatctagattaccacaatttcccacgca |
588 |
Q |
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| T |
22617527 |
cgaaaaaggtcaaagaagaaaaagatggatcgtgtcgtctagattaccacaatttcccacgca |
22617589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 507
Target Start/End: Original strand, 18406947 - 18407040
Alignment:
| Q |
414 |
tttggatttcgataaaccacccaaaacactaaattggatcatgtgttccaaaatacggtatggaactaccatggcaaagcctaaccactcataa |
507 |
Q |
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| T |
18406947 |
tttggatttcgataatccacccaaaacactaaattgtgtcaggtgtttcgagatatggtgtggaactactatgacgaggcctaaccaatcataa |
18407040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 8591278 - 8591337
Alignment:
| Q |
291 |
ataagaatgcggcttaattttgtcaaacaagtggtgaatagtatcatctttattcttgaa |
350 |
Q |
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| T |
8591278 |
ataagaatgagtcttgattttgtcaagcaggtggtgaatagtatcatatttatttttgaa |
8591337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 8591184 - 8591260
Alignment:
| Q |
204 |
gaaaaacaattacgagcataatagaggattgatccaccagacatggtaattaaaagtaaagttgacatgtttcacct |
280 |
Q |
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| T |
8591184 |
gaaaaataattacaaacataatagaggattgatccaccacacgtgctaactacaaacaaagttcacaggtttcacct |
8591260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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