View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12835_low_20 (Length: 263)
Name: NF12835_low_20
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40002146 - 40002374
Alignment:
| Q |
1 |
aaggtctttacatcaactaattaccgtggacgcaaagctgcatctgaaacgtaattaacatgaatggataagtaaagtttttctcactggatggt----- |
95 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
40002146 |
aaggtctttacatcaactaattaccgtgggcgcaaaactgcatctgaaacgtaatcaacatgaatggataagtgaagtttttctcactcgatgatgaact |
40002245 |
T |
|
| Q |
96 |
---aaaaacacaaattaataatataggtgaagatgccaacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagtt |
192 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40002246 |
gataaaaacacaaactaataatataggtgaagatgccaacataacaatatcaatattactagataagctaagtttcacacacaataaagtttagaaagtt |
40002345 |
T |
|
| Q |
193 |
aatgtcactttttggttaagtggtaaaac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40002346 |
aatgtcactttttggttaagtggtaaaac |
40002374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 40003705 - 40003740
Alignment:
| Q |
217 |
aaaacaacaatccttagactcgaaagtcacaggttc |
252 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40003705 |
aaaacaacaatccttagactcgaaaatcacaggttc |
40003740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University