View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_22 (Length: 240)
Name: NF12835_low_22
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52296667 - 52296889
Alignment:
| Q |
1 |
ctcaaccttttcagtctaacagaggccctcctagaccccttcgtcgtttcttccaggtaacaatattcaatatgcatattccatttatttgtttatttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52296667 |
ctcaaccttttcagtctaacagaggccctcctagaccccttcgtcgtttcttccaggtaacaatattcaatatgcatattccatttatttgtttatttat |
52296766 |
T |
|
| Q |
101 |
gaattatgaaactactatagtatatattgtgttgtgtctatgagttaggatttagcttaaggttaatatagagtaaaaagttgctagtaaattcagttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52296767 |
gaattatgaaactactatagtatatattgtgttgtgtctatcagttaggatttagcttaaggttaatatagagtaaaaagttgctagtaaattcagttgt |
52296866 |
T |
|
| Q |
201 |
ttgtgatttgttttaactgttgg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
52296867 |
ttgtgatttgttttaactgttgg |
52296889 |
T |
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