View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_23 (Length: 238)
Name: NF12835_low_23
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 1328923 - 1329100
Alignment:
| Q |
42 |
ccaaataattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattag |
141 |
Q |
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| T |
1328923 |
ccaaataattgaaggtatgggtgttaaaggtgagtctttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattag |
1329022 |
T |
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| Q |
142 |
ttgtatttggatcccaagtttaaagctttcatactgttagannnnnnnagtttattatgacgtatgaagtgtatgaaa |
219 |
Q |
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| T |
1329023 |
ttgtatttggatcccaagtttaaagctttcatactgttagatttttttagtttattatgacgtatgaagtgtatgaaa |
1329100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 44187587 - 44187717
Alignment:
| Q |
42 |
ccaaataattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttcttccaattggccgaattaagaattag |
141 |
Q |
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| T |
44187587 |
ccaaacaattgaagatatgggtgttaaaggcgagcctttctgttgtgaggtggcaatttgtaaaaaaaatcttattcctgttggctgaattaagaattag |
44187686 |
T |
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| Q |
142 |
ttgtatttggatcccaagtttaaagctttca |
172 |
Q |
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| T |
44187687 |
ttgtacttgcattccaagtttaaagctttca |
44187717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 44186279 - 44186353
Alignment:
| Q |
43 |
caaataattgaaggtatgggtgttaaaggtgagtttttctgttgtgaggtcgcaatttataagaaaaatcttctt |
117 |
Q |
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| T |
44186279 |
caaacaattgaagatctgggtgttaaaggggagtatttttgttgtcactttgcaatttataagaaaaaccttctt |
44186353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 6432798 - 6432874
Alignment:
| Q |
94 |
gcaatttataagaaaaatcttcttccaattggccgaattaagaattagttgtatttggatcccaagtttaaagcttt |
170 |
Q |
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| T |
6432798 |
gcaatttataggaaaaactttcttccaattggtcgaaagaggagttagttatttttgcatctcaagtttaaagcttt |
6432874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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