View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12835_low_28 (Length: 224)
Name: NF12835_low_28
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 39750755 - 39750560
Alignment:
| Q |
17 |
aacaagaataggaaaaacaacatgcaaaactgagagtaggagtgtgccacatgattgatcacttagagaagaagttttttctctataattagagactgtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39750755 |
aacaagaataggaaaaacaacatgcaaaactgaaagtaggagtgtgccacatgattgatcacttagagaagaagttttttctctataattagagactgtt |
39750656 |
T |
|
| Q |
117 |
ttcctgaaagaatctaaagccacatgccaaggacttggaggctcaggtgcattaagcacccactgagaccttacatcctgctgaacattcttctca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39750655 |
ttcctgaaagaatctaaagccacatgccaaggacttggaggctcaggtgcattaagcacccactgagaccttacatcctgctgaacattcttctca |
39750560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University