View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_3 (Length: 589)
Name: NF12835_low_3
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 40002078 - 40001510
Alignment:
| Q |
1 |
aggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaa |
100 |
Q |
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| T |
40002078 |
aggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaa |
40001979 |
T |
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| Q |
101 |
cttgggcaacttcttccttggaacagcattcggattggtttcattggcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatat |
200 |
Q |
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| T |
40001978 |
cttgggcaacttcttccttagaacagcattcggattggtttcattggcatgcgcattgccctgctagcccagtcaaaactcatattaactaaattaatat |
40001879 |
T |
|
| Q |
201 |
gcttcattgtccttttagcacacaaaacatgtcaccatataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaac |
300 |
Q |
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| T |
40001878 |
gcttcattgtttttttagcacacaaaacatgtcaccatataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaac |
40001779 |
T |
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| Q |
301 |
acaacaagtgcctataattatccattttaaaaatcttcaaaaaccaacattctatctctctctgtgcctattattcttcaagaacaaaaaggaaggaatt |
400 |
Q |
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| T |
40001778 |
ccaacaagtgcctataattatcca-tttaaaaatcttcaaaaaccaacattctatctctctctgtgcttattattcttcaagaacaaaaaggaaggaatt |
40001680 |
T |
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| Q |
401 |
aaggttgtgaattgtgatacatattatggagggtcttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttca |
500 |
Q |
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| T |
40001679 |
aaggttgtgaattgtgatacatattatggagggtcttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttca |
40001580 |
T |
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| Q |
501 |
tcaggatgtgctctacgtaacaacgatttttaccatgaaatcgatcaagggtactacacctaccatggag |
570 |
Q |
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| T |
40001579 |
tcaggatgtgctctacgtaacaacgatttttaccatgaaatcgatcaagggtactacacctaccatggag |
40001510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 43105016 - 43104966
Alignment:
| Q |
54 |
ttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttg |
104 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaacttg |
43104966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 43104918 - 43104824
Alignment:
| Q |
147 |
gcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtcctt-ttagcacacaaaacatgtcaccatat |
240 |
Q |
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| T |
43104918 |
gcatgcaccatgccctactagctcagtcgaaacttatattaactaaattaatgtgttacattgttcttcttggcacacaaaacatgtcatcatat |
43104824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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