View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_30 (Length: 214)
Name: NF12835_low_30
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 31005977 - 31006158
Alignment:
| Q |
19 |
attttggctagtgatgaaggtgaaattggctatgataattggaagtgtgaggaacatgttaatgtgattgtgaagagtgatgagttaaatgatgttgttg |
118 |
Q |
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| T |
31005977 |
attttggctagtgatgaaggtgaaattggctatgataattggaagtgtgaggaacatgttaatgtgattgtgaagagtgatgagttaaatgatgttgttg |
31006076 |
T |
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| Q |
119 |
gtggtttgataaatggatttggttcagctatgaaaaaagggtttgtgcttaattggagaaaagctgaggattgtgctcagtg |
200 |
Q |
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| T |
31006077 |
gtggtttgataaatggatttggttcagctatgaaaaaagggtttgtgcttaattggagaaaagctgaggattgtgctcagtg |
31006158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 30937762 - 30937921
Alignment:
| Q |
30 |
tgatgaaggtgaaattggctatgataattggaagtgtgaggaacatgttaatgtgattgtgaagagt--------gatg--agttaaatgatgttgttgg |
119 |
Q |
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| T |
30937762 |
tgatgaagcagaaattgtctatgataataggaattgtgaggaacatgttgtggtgattgtaaagagtttctttttgaaggaagttaaatgatgttgttgg |
30937861 |
T |
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| Q |
120 |
tggtttgataaatggatttggttcagctatgaaaaaagggtttgtgcttaattggagaaa |
179 |
Q |
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| T |
30937862 |
tggtttgattattcgatttggttcaactatgaaaaaagggtttgtgcttgatttgagaaa |
30937921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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