View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_6 (Length: 461)
Name: NF12835_low_6
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43818491 - 43818756
Alignment:
| Q |
1 |
ctcatggagggaagagatgaagaaaagttagctcaaactcctttgaagataaggaaattgagagtctcaagagtgaagtatatgaatgttcccttagaat |
100 |
Q |
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| T |
43818491 |
ctcatggagggaagatatgaagaaaaagtagctcaaactcctttgaaaataaggaaattgagagtctcaagagtgaagtatatgaatgttcccttagaat |
43818590 |
T |
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| Q |
101 |
gagtgaaaaaacacccaaaacttgaacctaccacacattgccatccaccaccatatcttgcatcaaactcctgacatgacattcaaagaaaaat-aaata |
199 |
Q |
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| T |
43818591 |
gagtgaaaaaacagccaaaacttgaacctaccacacattgccatccaccaccatatcttgcatcaaactcctgacatgacattcaaagaaaaataaaata |
43818690 |
T |
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| Q |
200 |
atatttgtatatcaatttatctttttaatgaacaacttctatctatctatgaacaacttaatgata |
265 |
Q |
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| T |
43818691 |
atatttgtatatcaatttatctttttaatgaacaacttctatctatctatgaacaacttgatgata |
43818756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 289 - 445
Target Start/End: Original strand, 43818754 - 43818910
Alignment:
| Q |
289 |
atagtacaaggactgaagagaaaaatgtaacctttttgatgtgagcagcaatggatttgcaatcaataacatcatatagatcaagagcttcagaagcata |
388 |
Q |
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| T |
43818754 |
atagtacaaggactgaagagaaaaatgtaacctttttgatgtgagcagcaatggatttgcaatcaataacatcatatagatcaagagcttcagaagcata |
43818853 |
T |
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| Q |
389 |
agccatagcttgaatctgcatcttagttggcatgtcagtatcttctatcatagcttt |
445 |
Q |
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| T |
43818854 |
agccatagcttgaatctgcatcttagttggcatgtcagtatcttctatcatagcttt |
43818910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 33030304 - 33030359
Alignment:
| Q |
357 |
acatcatatagatcaagagcttcagaagcataagccatagcttgaatctgcatctt |
412 |
Q |
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|||||||| |||||||| |||| ||||||||| | |||||||||||| |||||||| |
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| T |
33030304 |
acatcatagagatcaagggcttgagaagcatatgacatagcttgaatttgcatctt |
33030359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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