View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_7 (Length: 428)
Name: NF12835_low_7
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 22480820 - 22481215
Alignment:
| Q |
19 |
acttgtacttactccacctcgttctcacttagaatgaaagaccaacccagtgtttgttgccccttgatgtgaatataatcgtcattttaagattatagct |
118 |
Q |
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| T |
22480820 |
acttgtacttactccacctcgttctcacttagaatgaaagaccaacccagtgtttgttgccccttgatgtgaatataatggtcaatttaagattatagct |
22480919 |
T |
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| Q |
119 |
catccaataagcaaagtttttggtagtgtatttgatagacttgagcatataaaaagggaagatgagcaattacaagtctaatgttattcaattgatagac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22480920 |
catccaataagcaaagtttttggtagtgtatttgatagacttgagcatataaaaagggaagatgagcaattacaagtctaatgttattcaattgatagac |
22481019 |
T |
|
| Q |
219 |
atgagtttaatatttgttgtcaatgttatatataaatatctctttaacactttaaatatggatcaagatctcttgttgtagtggtttcacacagttctag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22481020 |
atgagtttaatatttgttgtcaatgttatatataaatatctctttaacattttaaatatggatcaagatctgttgttgtagtggtttcacacagttctag |
22481119 |
T |
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| Q |
319 |
gcagtagttgatctcggtcgtagattttttattcaataactcagatttatttattgttgatttgtctgtttaacacaatattatatctcgaccctt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22481120 |
gcagtagttgatctcggtcgtagattttttattcaataactcagatttattcattgttgatttgtctgtttaacacaatattatatctcgaccctt |
22481215 |
T |
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