View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12835_low_8 (Length: 410)
Name: NF12835_low_8
Description: NF12835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12835_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 154 - 405
Target Start/End: Complemental strand, 1435431 - 1435181
Alignment:
| Q |
154 |
aaataccaatgactcaatctcaattctcataacaataacaaacccactttcaccatctcattcaattttcttacaatggaagattcaaatccaaacaatt |
253 |
Q |
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| T |
1435431 |
aaataccaatgactcaatctcacttctcataacaataacaaaccca-tttcaacatctcattcaattttcttacaatggaagattcaaatcccaacaatt |
1435333 |
T |
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| Q |
254 |
cacttcagaaacttcattgttctgttaagaattacgattggggtttacctggtcaattgtcacaggttgctaagctttctgagcttaattctgggtttaa |
353 |
Q |
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| T |
1435332 |
cacttcagaaacttcattgttctgttaagaattacgattggggtttacctggtcaattgtcacaggttgctaagctttctgagcttaattctgggtttaa |
1435233 |
T |
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| Q |
354 |
atttgatccaatgaagccttatgctgaactttggattggtacctatgcttct |
405 |
Q |
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| T |
1435232 |
atttgatccaatgaagccttatgctgaactttggattggtacccatgattct |
1435181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 1435572 - 1435501
Alignment:
| Q |
18 |
acaagaatccacaaaaaagtgattatcttcaattca-----ttgcattcaaacaacaagacacaatccaccg |
84 |
Q |
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| T |
1435572 |
acaagaatccacaaaaaagtgattatcttcaattcaattcattgcattcaaacaacaagacacaatccaccg |
1435501 |
T |
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