View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_high_12 (Length: 250)
Name: NF12836_high_12
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 33910641 - 33910428
Alignment:
| Q |
20 |
ggatttggatcctcggctgccaaactctctgctgccatcttgctgccttacatcagccgttgaatccacttgttattgttcagattcggctaaagtgcta |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
33910641 |
ggatttggatcctcggctaccaaactctctgctgccatcttgctgccttacatcagccgttggatccacttgttatcgttcagattcggctaaagtgcta |
33910542 |
T |
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| Q |
120 |
tcaaatatcaatagctcattgnnnnnnnnnnnncactaaattcaatggtgtatagtgtaaattaattattttcggtcatactactattttaatttggctt |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33910541 |
tcaaatatcaatagctcattgaaaaagaaaaaacactaaattcaatggtgtatggtgtaaattaattattttcggtcatcctactattttaatttggctt |
33910442 |
T |
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| Q |
220 |
tgtatagtacacct |
233 |
Q |
| |
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|||||||||||||| |
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| T |
33910441 |
tgtatagtacacct |
33910428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 30402192 - 30402022
Alignment:
| Q |
48 |
ctgctgccatcttgctgccttacatcagccgttgaatccacttgttattgttcagattcggctaaagtgctatcaaatatcaatagctcattgnnnnnnn |
147 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30402192 |
ctgctgccatcctgctgccttacatcagccgttggatccacttgttattgttcagattcggctaaactgctatcaaatatcaatagctcattgaaaaaga |
30402093 |
T |
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| Q |
148 |
nnnnncactaaattcaatggtgtatagtgtaaattaattattttcggtcatactactattttaatttggctttgtata |
225 |
Q |
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|||| |||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
30402092 |
aaaaacactgcattcaatg-------gtgtaaagtaattattttcgctcaaactactattttaatttggctttgtata |
30402022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 41090360 - 41090437
Alignment:
| Q |
156 |
taaattcaatggtgtatagtgtaaattaattattttcggtcatactactattttaatttggctttgtatagtacacct |
233 |
Q |
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| T |
41090360 |
taaattcaatggtgtatggtgtaaagtaattattttcggtcatactactatcttaatttggctttgtatagtacacct |
41090437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 41091183 - 41091136
Alignment:
| Q |
20 |
ggatttggatcctcggctgccaaactctctgctgccatcttgctgcct |
67 |
Q |
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| T |
41091183 |
ggatttggatcctcggcagccaaactctctcctgccatcttgctgcct |
41091136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 33909749 - 33909819
Alignment:
| Q |
20 |
ggatttggatcctcggctgccaaactctctgctgccatcttgctgccttacatcagccgttgaatccactt |
90 |
Q |
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||||||||||||||||| |||||||||||| ||| ||||||||||||| ||| || ||||| |||||||| |
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| T |
33909749 |
ggatttggatcctcggcagccaaactctctcctgtcatcttgctgcctaacaccaaccgttagatccactt |
33909819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 30402231 - 30402193
Alignment:
| Q |
20 |
ggatttggatcctcggctgccaaactctctgctgccatc |
58 |
Q |
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|||||||||| |||||| ||||||||||||||||||||| |
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| T |
30402231 |
ggatttggattctcggcagccaaactctctgctgccatc |
30402193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 41090299 - 41090341
Alignment:
| Q |
59 |
ttgctgccttacatcagccgttgaatccacttgttattgttca |
101 |
Q |
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| T |
41090299 |
ttgctgccttccatcagccgttggatccacttgatattgttca |
41090341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41090269 - 41090306
Alignment:
| Q |
18 |
tgggatttggatcctcggctgccaaactctctgctgcc |
55 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||| |
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| T |
41090269 |
tgggatttcgatcctcggctgccaaactctttgctgcc |
41090306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 43415625 - 43415425
Alignment:
| Q |
19 |
gggatttggatcctcggctgccaaactctctgctgccatcttgctgccttacatcagccgttgaatccacttgttattgttcagattcggctaaagtgct |
118 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
43415625 |
gggatttggattctcggcagccaaactctctgctgccatcctgctgccttacatcagctgttgaatccacttgttattgttcagattcttctaaaatgct |
43415526 |
T |
|
| Q |
119 |
atcaaatatcaat-agctcattgnnnnnnnnnnnncactaaattcaatggtgtatagtgtaaattaattattttcggtcatactactattttaatttggc |
217 |
Q |
| |
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||||||||||||| ||||||||| |||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
43415525 |
atcaaatatcaataagctcattgaaaaagaaaaaacactgcattcaatg-------atgtaaagtaattattttcgctcatactactattttaatttggc |
43415433 |
T |
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| Q |
218 |
tttgtata |
225 |
Q |
| |
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|||||||| |
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| T |
43415432 |
tttgtata |
43415425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 48573952 - 48573827
Alignment:
| Q |
20 |
ggatttggatcctcggctgccaaactctctgctgccatcttgctgccttacatcagccgttgaatccacttgttattgttcagattcggcta-----aag |
114 |
Q |
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|||||||||| |||||| |||||| ||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
48573952 |
ggatttggattctcggcagccaaaatctctactgccatcctgttgccttacatcagccgttggatccacttgttattgttcagattcggctaaagtaaag |
48573853 |
T |
|
| Q |
115 |
tgctatcaaatatcaatagctcattg |
140 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48573852 |
tgctatcaaatatcaatagctcattg |
48573827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 48573787 - 48573747
Alignment:
| Q |
185 |
ttattttcggtcatactactattttaatttggctttgtata |
225 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
48573787 |
ttattttcgttcatagtactattttaatttggctttgtata |
48573747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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