View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_high_4 (Length: 688)
Name: NF12836_high_4
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 268 - 675
Target Start/End: Complemental strand, 53580870 - 53580445
Alignment:
| Q |
268 |
ttataggtttcgtatgtttttgatggaactaattcctgtataaaatttatttgtagatacatctaatcaaatcacacttacttcacaa------------ |
355 |
Q |
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| T |
53580870 |
ttataggtttcgtatgtttttgatggaactaattcctgtataaaatttatttatagatacatctaatcaaatcacacttacttcacaaacattaagtgtt |
53580771 |
T |
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| Q |
356 |
-----gtggaaaattagttattcgaactcgcaccccaacatattaaatgtgcatatactctttttaccattatatgaatatgtaagaacaaattgttatt |
450 |
Q |
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| T |
53580770 |
agcaagtgaaaaattacttattcgaacccgcaccccaacatattaaatgtgcatatactctttttaccattatatgaatatgtaagaacaaattgttatt |
53580671 |
T |
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| Q |
451 |
tataaaaactaaattcaattttctagtagtgattacttcatcatatgaaacttgaatgaattaatttatttccctaatgtggaatcttgtaactacatct |
550 |
Q |
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| T |
53580670 |
tataaaaactaaattcaattttctagtagtgattacttcatcatatgaaacttgaatgaattaatttatttccctaatgtggaatcttgtaactatatct |
53580571 |
T |
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| Q |
551 |
t-nnnnnnnnttgaattctaaactacaatttattttcaacaaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgca |
649 |
Q |
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| T |
53580570 |
taaaaaaaaattgaattctacactaaaatgtattttcaacaaatgggtgcagatgcatatgagacaccctaaatagaataaaataaaattaaagagtgca |
53580471 |
T |
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| Q |
650 |
aagagtcggaggatataatgtacaaa |
675 |
Q |
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| T |
53580470 |
aagtgtcggaggatataatgtacaaa |
53580445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 53581139 - 53580902
Alignment:
| Q |
10 |
gcagagacagggaagaacattacttgtttagttactgatgcattttattggtttggtgcggacctagctaaggaaatgcatgccaaatgggttcctcttt |
109 |
Q |
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| T |
53581139 |
gcagagacagggaagaacattacttgtttagttactgatgcattttattggtttggtgcggacctagctaaggaaatgcatgccaaatgggttcctcttt |
53581040 |
T |
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| Q |
110 |
ggactgcagggcctcactctctccttacacatgttttcacagatcttatcagagaaaagataggctctaaggaaggtacaaaaatttctaatttgatcaa |
209 |
Q |
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| T |
53581039 |
ggactgcagggcctcactctctccttacacatgttttcacagatcttatcagagaaaagataggctctaaggaaggtacaaaaatttctaatttgatcaa |
53580940 |
T |
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| Q |
210 |
cgaatcttctttaatttactcatttaagattttagggc |
247 |
Q |
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| T |
53580939 |
caaatcttctttaatttactcatttaagattttagggc |
53580902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 53567849 - 53567664
Alignment:
| Q |
10 |
gcagagacagggaagaacattacttgtttagttactgatgcattttattggtttggtgcggacctagctaaggaaatgcatgccaaatgggttcctcttt |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
53567849 |
gcagagacagggaagaacattacttgtttggttactgatgcatttttttggtttggtgcggatttagctgaggaaatgcatgccaaatgggttcctcttt |
53567750 |
T |
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| Q |
110 |
ggactgcagggcctcactctctccttacacatgttttcacagatcttatcagagaaaagataggctctaaggaaggtacaaaaatt |
195 |
Q |
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| T |
53567749 |
ggactgcaggacctcactctcttcttacacatgtttacacagatcttatcagagaaaagactggctccaaggaaggtacacaaatt |
53567664 |
T |
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