View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_low_1 (Length: 1078)
Name: NF12836_low_1
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_low_1 |
 | |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 969; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 969; E-Value: 0
Query Start/End: Original strand, 21 - 1066
Target Start/End: Complemental strand, 30340186 - 30339141
Alignment:
| Q |
21 |
ttcgtcgcaggtgccgagtgaatactcagccgttatgattcaagaatgtgtaagtatcgccaataagtttacctgtagcagcactatttgtatgcttctt |
120 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30340186 |
ttcgtcacaggtgccgagtgaatactcagccgttatgattcaagaatgtgtaagtatcgccgataagtttacctgtagcagcactatttgtatgcttctt |
30340087 |
T |
|
| Q |
121 |
tgaaatcaaatttggtacaatccttcctagtcctgtagaaagtacctaatggacacgaacaaataactttaatctcaatgcctttgataaaaggagttag |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30340086 |
tgaaatcaaatttggtacaatccttcctagtcctgtagaaagtacctaatggacacgaacaaataactttaatctcaatgcctttgataaaaggagttag |
30339987 |
T |
|
| Q |
221 |
agcaccaagaaatggtgctctatattaagctaaaatcaatccatcacagcaccatctaaaaaataatcccttaatgggaacagaaaagcaggaacattaa |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339986 |
agcaccaagaaatggtgctctatattaagctaaaatcaatccatcacagcaccatgtaaaaaataatcccttaatgggaacagaaaagcaggaacattaa |
30339887 |
T |
|
| Q |
321 |
agctaaagaattactgttgcacttaccgtcattataatcaaggcacttagtgcaccagacaaaacaattgacttaggatgacgcatagccataagagctg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339886 |
agctaaagaattactgttgcacttaccgtcattataatcaaggcacttagtgcaccagacaaaacaattgacttaggatgacgcatagccataagagctg |
30339787 |
T |
|
| Q |
421 |
ctataataaatgtctcatccccaatctagcatgaaaaaaggttttcagttaaaagccataacgcaaacatagaatagaaaagatacaacaatcattctta |
520 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339786 |
ctataataaatgtctcatccccaatctagcatgaaaaaaggttttcagttaaaagccataacgcaaacatagaatagaaaagatacaacaatcattctta |
30339687 |
T |
|
| Q |
521 |
acaatccgactgctcgttacatcatagctagagcctagtcgcataaagttctaataagcatttatagaaagagggtatttaaagaatcttgccaattgca |
620 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339686 |
acaatccgactgctcgttacatcatagctagagcctagtcgcataaagttctaataagtatttatagaaagagggtatttaaagaatcttgccaattgca |
30339587 |
T |
|
| Q |
621 |
ataacaattagtattttaaacaaccatcgagtagaaattagcatctgcatctctgttttttcgggacatctctcgtttaatttcaacatttataagctca |
720 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||| |
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| T |
30339586 |
ataacaattagtattttaaacaaccattgagtagaaattagcatctgcatctctgttttttcagaacatatctcgttaaatttcaacatttataagctca |
30339487 |
T |
|
| Q |
721 |
taagaactttttcgtacaaannnnnnnataacggagaaacttttgtaagctagaagctattctataatcaacttcggtttgattactaatagttagataa |
820 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339486 |
taagaactttttcgtacaaatttttttataacggagaaacttttgtaagctagaagctattctataatcaacttcggtttgattactaatagttagatat |
30339387 |
T |
|
| Q |
821 |
gaattaggtaagctagaaacttataataaccgataattttaccaaacactacaaattcaatctgctgctaaattatctgctataagctgatctactatca |
920 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339386 |
gaatcaggtaagctagaaacttataataaccgataattttaccaaacactacaaattcaatctgctgctaaattatctgctataagctgatctactatca |
30339287 |
T |
|
| Q |
921 |
actactttatcagctctccactacattttaccaaacaacgataacaactagtagatttctttccatatatgtgtcacgttgacttcatatcgcacacttt |
1020 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30339286 |
actactttatcagctctccactacattttaccaaacaacgataacaactagtcgattactttccatatatgtgtcacattgacttcatatcgcacacttt |
30339187 |
T |
|
| Q |
1021 |
tactcattcaaccaatttcagcttcctctaacaagactcgtctctg |
1066 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339186 |
tactcattcaaccaatttcagcttcctctaacaagactcgtctctg |
30339141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 854 - 886
Target Start/End: Original strand, 35696647 - 35696679
Alignment:
| Q |
854 |
taattttaccaaacactacaaattcaatctgct |
886 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
35696647 |
taattttaccaaacactacaaattcaatctgct |
35696679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 881
Target Start/End: Original strand, 30070322 - 30070357
Alignment:
| Q |
846 |
ataaccgataattttaccaaacactacaaattcaat |
881 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
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| T |
30070322 |
ataaccgctaattttaccaaacactacaaattcaat |
30070357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 847 - 882
Target Start/End: Original strand, 39033665 - 39033700
Alignment:
| Q |
847 |
taaccgataattttaccaaacactacaaattcaatc |
882 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
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| T |
39033665 |
taaccgataattttatcaaacactacaaattcaatc |
39033700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 848 - 882
Target Start/End: Original strand, 166769 - 166803
Alignment:
| Q |
848 |
aaccgataattttaccaaacactacaaattcaatc |
882 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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| T |
166769 |
aaccgctaattttaccaaacactacaaattcaatc |
166803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 848 - 882
Target Start/End: Original strand, 31812160 - 31812194
Alignment:
| Q |
848 |
aaccgataattttaccaaacactacaaattcaatc |
882 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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| T |
31812160 |
aaccgttaattttaccaaacactacaaattcaatc |
31812194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 848 - 882
Target Start/End: Original strand, 32348436 - 32348470
Alignment:
| Q |
848 |
aaccgataattttaccaaacactacaaattcaatc |
882 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
32348436 |
aaccgctaattttaccaaacactacaaattcaatc |
32348470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 848 - 882
Target Start/End: Complemental strand, 35272524 - 35272490
Alignment:
| Q |
848 |
aaccgataattttaccaaacactacaaattcaatc |
882 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
35272524 |
aaccgataattttactaaacactacaaattcaatc |
35272490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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