View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12836_low_10 (Length: 318)

Name: NF12836_low_10
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12836_low_10
NF12836_low_10
[»] chr3 (1 HSPs)
chr3 (18-310)||(36416446-36416741)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 36416741 - 36416446
Alignment:
Q  18 acaaacttcatgcatacatgtgcattgtgatgttctaaaatcctaaactcctaataaacaacnnnnnnnnn---tctagttgtttaatttgatttgattc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  36416741 acaaacttcatgcatacatgtgcattgtgatgttctaaaatcctaaactcctaataaacaacaaaaaaaaaaaatctagttgtttaatttgatttgattc 36416642  T
Q  115 tgtcacaatgccaagcaaactaaggaaggcaattggtgcagtaaaagaccaaacaagcattagcctagcaaaggtaacacatgctgcaaatcttgaggta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416641 tgtcacaatgccaagcaaactaaggaaggcaattggtgcagtaaaagaccaaacaagcattagcctagcaaaggtaacacatgctgcaaatcttgaggta 36416542  T
Q  215 acaattcttaaagcaacaacacatgataaaaatccaattgaagaacgttatgtgaatgaaattgtcaacatagtatcttccaacaaagcctatgct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36416541 acaattcttaaagcaacaacacatgataaaaatccaattgaagaacgttatgtgaatgaaattgtcaacatagtatcttccaacaaagcctatgct 36416446  T

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