View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_low_16 (Length: 242)
Name: NF12836_low_16
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 35355524 - 35355404
Alignment:
| Q |
106 |
acctgtgttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataa |
205 |
Q |
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| T |
35355524 |
acctgtgttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataa |
35355425 |
T |
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| Q |
206 |
gcatagagaacattgtaaatg |
226 |
Q |
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| T |
35355424 |
gcatagagaacattgtaaatg |
35355404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 35370964 - 35370853
Alignment:
| Q |
113 |
ttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcataga |
212 |
Q |
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| T |
35370964 |
ttttaaatcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcataagcataga |
35370865 |
T |
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| Q |
213 |
gaacattgtaaa |
224 |
Q |
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| T |
35370864 |
gaacattgtaaa |
35370853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 35381535 - 35381420
Alignment:
| Q |
109 |
tgtgttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagca |
208 |
Q |
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| T |
35381535 |
tgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagca |
35381436 |
T |
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| Q |
209 |
tagagaacattgtaaa |
224 |
Q |
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|| || |||||||||| |
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| T |
35381435 |
tatagcacattgtaaa |
35381420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 35355615 - 35355573
Alignment:
| Q |
15 |
caaaggggtattacattggtaatcactaaatcattctccaagg |
57 |
Q |
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| T |
35355615 |
caaagggatattacattggtaatcactaaatcattctccaagg |
35355573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 19685513 - 19685398
Alignment:
| Q |
109 |
tgtgttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagca |
208 |
Q |
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|||||||||||||||||||||| ||||| || | ||| ||||| ||||||| ||| ||||||||||||||||||| ||||| ||||||||| | ||||| |
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| T |
19685513 |
tgtgttttaaatcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaaaagca |
19685414 |
T |
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| Q |
209 |
tagagaacattgtaaa |
224 |
Q |
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||||| |||||||||| |
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| T |
19685413 |
tagagcacattgtaaa |
19685398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 19629142 - 19629253
Alignment:
| Q |
113 |
ttttaaatcttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcataga |
212 |
Q |
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|||||||||||||||||| ||||| || | ||| ||||| |||||| ||| ||||||||||||| |||| | |||| ||||||||| | ||||||||| |
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| T |
19629142 |
ttttaaatcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcacaagcataga |
19629241 |
T |
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| Q |
213 |
gaacattgtaaa |
224 |
Q |
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| ||| |||||| |
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| T |
19629242 |
gcacaatgtaaa |
19629253 |
T |
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