View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12836_low_19 (Length: 217)

Name: NF12836_low_19
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12836_low_19
NF12836_low_19
[»] chr4 (13 HSPs)
chr4 (59-217)||(30331026-30331184)
chr4 (1-59)||(3756289-3756347)
chr4 (1-59)||(27893885-27893943)
chr4 (1-61)||(27864561-27864621)
chr4 (1-56)||(1771309-1771364)
chr4 (1-56)||(17619195-17619250)
chr4 (1-56)||(711962-712017)
chr4 (6-61)||(28988470-28988525)
chr4 (1-56)||(32728359-32728414)
chr4 (1-52)||(48435622-48435673)
chr4 (1-62)||(35037001-35037062)
chr4 (1-61)||(46827749-46827809)
chr4 (1-61)||(55966389-55966449)
[»] chr5 (5 HSPs)
chr5 (1-61)||(5256992-5257052)
chr5 (1-56)||(33855086-33855141)
chr5 (1-63)||(7617128-7617190)
chr5 (65-101)||(439646-439682)
chr5 (1-58)||(25915030-25915087)
[»] chr6 (14 HSPs)
chr6 (1-56)||(33242405-33242460)
chr6 (1-56)||(33253915-33253970)
chr6 (1-58)||(24204030-24204087)
chr6 (1-58)||(27441542-27441599)
chr6 (1-56)||(13743264-13743319)
chr6 (1-56)||(13748764-13748819)
chr6 (1-60)||(30735980-30736039)
chr6 (6-56)||(31109270-31109320)
chr6 (1-62)||(7292743-7292804)
chr6 (1-62)||(26466795-26466856)
chr6 (1-62)||(26670052-26670113)
chr6 (1-61)||(3213397-3213457)
chr6 (1-61)||(7273378-7273438)
chr6 (1-61)||(7367546-7367606)
[»] chr8 (12 HSPs)
chr8 (1-59)||(29800993-29801051)
chr8 (1-61)||(35181513-35181573)
chr8 (1-65)||(42295188-42295252)
chr8 (1-56)||(42197478-42197533)
chr8 (1-62)||(33630036-33630097)
chr8 (1-56)||(2166006-2166061)
chr8 (1-56)||(29705364-29705419)
chr8 (1-56)||(34304790-34304845)
chr8 (1-60)||(42699255-42699314)
chr8 (1-58)||(30912605-30912662)
chr8 (1-62)||(36743526-36743587)
chr8 (26-62)||(19386638-19386674)
[»] chr2 (16 HSPs)
chr2 (1-58)||(11825697-11825754)
chr2 (1-58)||(41282017-41282074)
chr2 (1-61)||(43114554-43114614)
chr2 (1-56)||(966877-966932)
chr2 (1-62)||(4764769-4764830)
chr2 (1-61)||(34895784-34895844)
chr2 (1-56)||(1750416-1750471)
chr2 (1-56)||(12415503-12415558)
chr2 (1-56)||(12427563-12427618)
chr2 (1-56)||(16096749-16096804)
chr2 (1-56)||(16803970-16804025)
chr2 (1-56)||(16843252-16843307)
chr2 (1-56)||(18491707-18491762)
chr2 (1-59)||(6518512-6518569)
chr2 (1-58)||(4299463-4299520)
chr2 (1-61)||(12302296-12302356)
[»] chr3 (9 HSPs)
chr3 (1-56)||(10457935-10457990)
chr3 (1-56)||(40808867-40808922)
chr3 (1-62)||(4190308-4190369)
chr3 (1-62)||(9434120-9434181)
chr3 (1-62)||(54246191-54246252)
chr3 (1-72)||(46941038-46941110)
chr3 (1-56)||(42100690-42100745)
chr3 (1-56)||(45126971-45127026)
chr3 (26-70)||(34791817-34791861)
[»] chr1 (10 HSPs)
chr1 (1-56)||(44112679-44112734)
chr1 (1-56)||(48119630-48119685)
chr1 (1-67)||(5489767-5489833)
chr1 (7-56)||(35003296-35003345)
chr1 (1-56)||(14427349-14427404)
chr1 (1-56)||(38113238-38113293)
chr1 (1-56)||(41065155-41065210)
chr1 (1-56)||(43571129-43571184)
chr1 (1-59)||(2497605-2497663)
chr1 (63-97)||(26805875-26805909)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-58)||(45762-45819)
[»] chr7 (9 HSPs)
chr7 (1-61)||(40236916-40236976)
chr7 (5-56)||(5194278-5194329)
chr7 (1-56)||(39998410-39998465)
chr7 (1-60)||(43343667-43343726)
chr7 (1-59)||(4638242-4638300)
chr7 (1-58)||(10573749-10573806)
chr7 (21-62)||(33384866-33384907)
chr7 (1-58)||(44416977-44417034)
chr7 (5-61)||(27535278-27535334)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-56)||(35499-35554)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-62)||(681-742)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 30331184 - 30331026
Alignment:
Q  59 ttttattttatagagataaaaaacatatttaaccaaaaataaattattgtgagaagcttcaattttgagtttacaaaataacgcacactaaaccctctac 158  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30331184 ttttattttatagagatcaaaaatatatttaaccaaaaaaaaattattgtgagaagcttcaatttcgagtttacaaaataacgcacactaaaccctctac 30331085  T
Q  159 tcgtctttctttgttcgaaacagccaccgtcgagagccaccacgcgaggcagagaaacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30331084 tcgtctttctttgttcgaaacagccaccgtcgagagccaccacgcgaggcagagaaacc 30331026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3756289 - 3756347
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    |||| |||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||    
T  3756289 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttct 3756347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27893885 - 27893943
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    ||||||||||||||| |||||||  |||||| ||||||||||| |||||||||||||||    
T  27893885 taatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 27893943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27864621 - 27864561
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||||||| |||||||  |||||| ||||||||||| |||||||||||| ||||    
T  27864621 taatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttccttt 27864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1771309 - 1771364
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||||||| ||| || |||| |||||||||||||||||||    
T  1771309 taatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17619195 - 17619250
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  17619195 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatttt 17619250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 712017 - 711962
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| ||| |||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  712017 taatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 711962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 28988525 - 28988470
Alignment:
Q  6 catggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||||||||| ||||| || |||||| |||| ||||||||||||||||||| ||||    
T  28988525 catggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttccttt 28988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32728414 - 32728359
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| | |||||||||||||||||    
T  32728414 taatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatttt 32728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48435622 - 48435673
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaaca 52  Q
    |||| |||||||||| |||| ||| || ||||||||||||||||||||||||    
T  48435622 taatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaaca 48435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35037062 - 35037001
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||| |||||||||| |||| | | ||||| ||||| |||| ||||||||||||||||||||    
T  35037062 taatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttttctttt 35037001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46827749 - 46827809
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||| ||| |||||| |||| | | ||||||||||| ||||||||||||||||||| ||||    
T  46827749 taatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 46827809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 55966389 - 55966449
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||| ||| |||||||  |||||| |||| |||||| |||||||||||| ||||    
T  55966389 taatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttccttt 55966449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5257052 - 5256992
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||||||| |||||||  |||||| ||||||||||| |||||||||||||||||    
T  5257052 taatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttcttt 5256992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33855086 - 33855141
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||||||| ||| || |||| |||||||||||||||||||    
T  33855086 taatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7617190 - 7617128
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttta 63  Q
    |||||||||||||||  ||||| | |||||| |||| ||||||||||||||||||| ||||||    
T  7617190 taatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcctttta 7617128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 439682 - 439646
Alignment:
Q  65 tttatagagataaaaaacatatttaaccaaaaataaa 101  Q
    ||||||||||| |||||||||||||||||||||||||    
T  439682 tttatagagatcaaaaacatatttaaccaaaaataaa 439646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25915030 - 25915087
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||||||| |||||| ||||| || ||| || |||| |||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 25915087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33242460 - 33242405
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| ||||  || |||||||||||||||||||||||||||||||    
T  33242460 taatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacatttt 33242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33253970 - 33253915
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| || ||||||||||||||||||||||||||||    
T  33253970 taatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacatttt 33253915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24204030 - 24204087
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||||||||| |||| |||| ||| ||| || ||||||||||||||||||||||||||    
T  24204030 taatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttc 24204087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27441599 - 27441542
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||||||| || ||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  27441599 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 27441542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13743264 - 13743319
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||| ||  |||||| |||| |||||||||||||||||||    
T  13743264 taatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13748764 - 13748819
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||| ||  |||||| |||| |||||||||||||||||||    
T  13748764 taatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30736039 - 30735980
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctt 60  Q
    ||||||||| ||||| |||||||| ||| || ||||  ||||||||||||||||||||||    
T  30736039 taatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttctt 30735980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 31109270 - 31109320
Alignment:
Q  6 catggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||  ||||||  ||||||||||| |||||||||||||||||||    
T  31109270 catggggtgtataatgggatgtatgattaaagggtgttcatgtaacatttt 31109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7292804 - 7292743
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||||||| ||||||  |||| || |||||| |||||||||||| ||||||||||| |||||    
T  7292804 taatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcctttt 7292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26466856 - 26466795
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||||||||| |||| |||||||| ||| || |||| |||||| |||||||||||| |||||    
T  26466856 taatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcctttt 26466795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26670052 - 26670113
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    ||||||||| ||||| ||||| || ||| || |||| ||||||||||||||||||| |||||    
T  26670052 taatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcctttt 26670113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3213457 - 3213397
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||||||| ||||| |  |||||| |||| |||||| |||||||||||| ||||    
T  3213457 taatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttccttt 3213397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7273378 - 7273438
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||||||| ||||  || ||| || |||| ||||||||||||||||||| ||||    
T  7273378 taatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttccttt 7273438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7367606 - 7367546
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    ||||||||||| ||| ||||| || |||||| |||||| ||||||| ||||||||| ||||    
T  7367606 taatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttccttt 7367546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29800993 - 29801051
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    ||||||||||||||| |||||||  |||||| ||||||||||| |||||||||||||||    
T  29800993 taatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 29801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35181573 - 35181513
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||| |||||||||| |||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  35181573 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 35181513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42295252 - 42295188
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttttatt 65  Q
    |||||||||| |||| ||||| || ||| || |||| ||||||||||||||||||||||||||||    
T  42295252 taatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcttttatt 42295188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42197478 - 42197533
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||||||| | ||||||||||||| ||| || ||||||||||||||||||||||||    
T  42197478 taatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33630036 - 33630097
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||| ||| |||||| ||||| || ||||||||||| ||||||| |||||||||||||||||    
T  33630036 taatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttctttt 33630097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2166006 - 2166061
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||| | |||||||| ||| || |||||||||||||||||| |||||    
T  2166006 taatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29705419 - 29705364
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||||||| |||  | |||| |||||||||||||||||||    
T  29705419 taatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34304845 - 34304790
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| | |||||||||||||||||    
T  34304845 taatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatttt 34304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42699314 - 42699255
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctt 60  Q
    ||||||||  ||||| |||||||| ||| || |||| |||||||||||||||||||||||    
T  42699314 taatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttctt 42699255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30912605 - 30912662
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||||||||  |||| |||||||| ||| || |||| |||||||||||||||||||||    
T  30912605 taatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 30912662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36743526 - 36743587
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||||||| |||||| |||||||  ||| || |||| ||||||||||||||||||| |||||    
T  36743526 taatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcctttt 36743587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 19386638 - 19386674
Alignment:
Q  26 gtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  19386638 gtatgattaaagggtgttcatgtaacattttcctttt 19386674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11825697 - 11825754
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  11825697 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 11825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41282017 - 41282074
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  41282017 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 41282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 43114614 - 43114554
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||| |||||||||| |||| ||| ||||||||||| ||||||||||||||||||| ||||    
T  43114614 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttt 43114554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 966877 - 966932
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  966877 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4764769 - 4764830
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    ||||||||||||||| |||| ||| ||| || ||||||||||| |||||||||||| |||||    
T  4764769 taatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcctttt 4764830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34895784 - 34895844
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||| |||||||||| |||| ||| || |||||||||||||||||||||||| ||| ||||    
T  34895784 taatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactttccttt 34895844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1750471 - 1750416
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||||||| |||||| |||||||| ||| || |||| |||||||||||||||||||    
T  1750471 taatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12415503 - 12415558
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| ||||  || ||||||||||| |||||||||||||||||||    
T  12415503 taatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12427563 - 12427618
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| ||||  || ||||||||||| |||||||||||||||||||    
T  12427563 taatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16096804 - 16096749
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||||||||||||||  ||||||| ||| || |||| |||||||||||||||||||    
T  16096804 taatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16804025 - 16803970
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||| ||| |||| ||| ||||||||||| |||||||||||||||||||    
T  16804025 taatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16803970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16843307 - 16843252
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||| ||| |||| ||| ||||||||||| |||||||||||||||||||    
T  16843307 taatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18491762 - 18491707
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||| ||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  18491762 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6518512 - 6518569
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    |||| |||||||||| |||| | | ||||||||||| ||||||||||||||||||||||    
T  6518512 taatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttttct 6518569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4299463 - 4299520
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||| ||||| |||| |||| ||| ||||||||||| ||||||||| |||||||||||    
T  4299463 taatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttttc 4299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12302296 - 12302356
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||||||| |||||| |||||||| |||  | |||| ||||||||||||||||||| ||||    
T  12302296 taatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttccttt 12302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10457935 - 10457990
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  10457935 taatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatttt 10457990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40808922 - 40808867
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||||||| ||| || ||||||||||| ||||||||||||    
T  40808922 taatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacatttt 40808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4190308 - 4190369
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    ||||||||  ||||| |||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  4190308 taatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctttt 4190369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9434181 - 9434120
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||| |||||||||| |||| | | ||||||||||| ||||||||||||||||||| |||||    
T  9434181 taatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattttcctttt 9434120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54246191 - 54246252
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||||||| |||||| |||||||| ||| || |||| ||||||||||||||||||| |||||    
T  54246191 taatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcctttt 54246252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 46941110 - 46941038
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc-ttttattttataga 72  Q
    ||||||||||||||| ||||| |  ||| || |||| ||||||||||||||||||| | ||||||||||||||    
T  46941110 taatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcctttttattttataga 46941038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42100745 - 42100690
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| ||||| || ||| || |||| |||||||||||||||||||    
T  42100745 taatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45126971 - 45127026
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||||||  |||||| |||| |||||| ||||||||||||    
T  45126971 taatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 34791861 - 34791817
Alignment:
Q  26 gtatgattaaatggtgttcatgtaacatttttcttttattttata 70  Q
    ||||||||||| ||||||||||||||||||| | ||| |||||||    
T  34791861 gtatgattaaagggtgttcatgtaacattttccattttttttata 34791817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44112734 - 44112679
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  44112734 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 44112679  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48119685 - 48119630
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  48119685 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 48119630  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5489833 - 5489767
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttttatttt 67  Q
    |||||||| |||||| |||||||  ||| || |||| ||||||||||||||||||| ||||||||||    
T  5489833 taatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttccttttatttt 5489767  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 35003345 - 35003296
Alignment:
Q  7 atggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  35003345 atggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35003296  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14427404 - 14427349
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||| ||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 14427349  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38113238 - 38113293
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||| ||| ||||||||||| ||||||||| |||||||||    
T  38113238 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacatttt 38113293  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41065210 - 41065155
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| |||  ||| ||||||||||| |||||||||||||||||||    
T  41065210 taatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43571129 - 43571184
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| ||||| || ||| || |||| |||||||||||||||||||    
T  43571129 taatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2497605 - 2497663
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    ||||| ||||||||| ||||||   |||||| ||||||||||| |||||||||||||||    
T  2497605 taatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttct 2497663  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 26805875 - 26805909
Alignment:
Q  63 attttatagagataaaaaacatatttaaccaaaaa 97  Q
    ||||||||| |||||||||||||||||||||||||    
T  26805875 attttatagggataaaaaacatatttaaccaaaaa 26805909  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45762 - 45819
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    |||||||| || ||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  45762 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 45819  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40236976 - 40236916
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||| |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||||    
T  40236976 taatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattttccttt 40236916  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 5194278 - 5194329
Alignment:
Q  5 acatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||| ||||| || |||||| ||||||||||||||||||||||||    
T  5194278 acatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 5194329  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39998465 - 39998410
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    ||||||||||||||| |||| ||  |||||||||||  ||||||||||||||||||    
T  39998465 taatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacatttt 39998410  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43343667 - 43343726
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctt 60  Q
    ||||||||||||||| |||| ||| |||  | |||||| |||||||||||||||||||||    
T  43343667 taatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttctt 43343726  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4638242 - 4638300
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttct 59  Q
    ||||| ||||||||| |||| | | |||||| |||| ||||||||||||||||||||||    
T  4638242 taatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttct 4638300  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10573806 - 10573749
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    ||||||||||||||| |||| ||  |||||| |||| |||||| ||||||||||||||    
T  10573806 taatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 33384907 - 33384866
Alignment:
Q  21 ggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    |||| ||||||||||||| ||||||||||||||||| |||||    
T  33384907 ggggtgtatgattaaatgatgttcatgtaacattttcctttt 33384866  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44416977 - 44417034
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttc 58  Q
    ||||||||||||||| |||| ||| |||  | |||||| |||||||||||||||||||    
T  44416977 taatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 27535278 - 27535334
Alignment:
Q  5 acatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttcttt 61  Q
    |||||| |||| |||| | | ||||||||||| ||||||||||||||||||| ||||    
T  27535278 acatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattttccttt 27535334  T

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Target: scaffold0100 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35499 - 35554
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttt 56  Q
    |||| |||||||||| ||||  || |||||||||||||||||| ||||||||||||    
T  35499 taatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacatttt 35554  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 742 - 681
Alignment:
Q  1 taatacatggggtgtgcaatggggagtatgattaaatggtgttcatgtaacatttttctttt 62  Q
    ||||||||| ||||| ||||| || ||| || |||| ||||||||||||||||||| |||||    
T  742 taatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcctttt 681  T

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