View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_low_2 (Length: 715)
Name: NF12836_low_2
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 32482725 - 32482156
Alignment:
| Q |
18 |
aacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatgaccttgttgttgtgattcttctccttggtttcctcttccacctccacct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32482725 |
aacatcatcgtttttgttgtaccaaaatagtgtctcttgtggtggaatatgaccttgttgttgtgattcttctccttggtttcctcttccacctcctcct |
32482626 |
T |
|
| Q |
118 |
aatgagaacaaaccagccatttctttgaagnnnnnnnccttaaccctaacaacaatagtttctttaattgtgtctcaatttccatatcaaaaacctaaat |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482625 |
aatgagaacaaaccagccatttctttgaagaaaaaaaccttaaccctaacaacaatactttctttaattgtgtctcaatttccatatcaaaaacctaaat |
32482526 |
T |
|
| Q |
218 |
aggnnnnnnnnnnnnggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttgtgaaaaatggtttatgggataccgtgttt |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482525 |
aggttttttgtttttggtacaaagaacatgagaaatcaagaaacagttgagagagaattaattgggatttgtgaaaaatggtttatgggataccgtgttt |
32482426 |
T |
|
| Q |
318 |
tgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttgttatggttgggaaaagagtatagtaattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482425 |
tgtgtgcgtctccagaaaattacacaaaacaaaacacagagaaaatgaaaacataagtatatgtctccttgttatggttgggaaaagagtatagtaattg |
32482326 |
T |
|
| Q |
418 |
aattgaattgaagttaataagaaaaagaaggacagaaaacagaaacagacggctaaacagtgtcgtggcagcaagcagcgttaatcacgctttcaatatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482325 |
aattgaattgaagttaataagaaaaagaaggacagaaaacagaaacagacggctaaacagtgtcgtggcagcaagcagcgttaatcacgctttcaatatc |
32482226 |
T |
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| Q |
518 |
acttcccagctagcagctatagcttccttcaacgtttgtttttgtgtaatactcctaacttatgtttttt |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482225 |
acttcccagctagcagctatagcttccttcaacgtttgtttttgtgtaatactcctaacttatgtttttt |
32482156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 631 - 708
Target Start/End: Complemental strand, 32482111 - 32482034
Alignment:
| Q |
631 |
aggaaggaacagtaccacagtctttttacagctatctctgcactgcaaacgccgccatgcccctctctttctctctgc |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482111 |
aggaaggaacagtaccacagtctttttacagctatctctgcactgcaaacgccgccatgcccctctctttctctctgc |
32482034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 11308535 - 11308502
Alignment:
| Q |
316 |
tttgtgtgcgtctccagaaaattacacaaaacaa |
349 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
11308535 |
tttgtgtgcgtctccagaaaattccacaaaacaa |
11308502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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