View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12836_low_5 (Length: 594)
Name: NF12836_low_5
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Complemental strand, 5160497 - 5159986
Alignment:
| Q |
11 |
cagaacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5160497 |
cagaatctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttaccaattgatgaaggtat |
5160398 |
T |
|
| Q |
111 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160397 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgat |
5160298 |
T |
|
| Q |
211 |
atatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
310 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160297 |
atatccaaataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
5160198 |
T |
|
| Q |
311 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgtttt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5160197 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccactttgtttt |
5160098 |
T |
|
| Q |
410 |
ttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgc |
509 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160097 |
ttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatccttgc |
5159998 |
T |
|
| Q |
510 |
atgtaatttcca |
521 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5159997 |
atgtaatttcca |
5159986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 521
Target Start/End: Complemental strand, 5182739 - 5182234
Alignment:
| Q |
14 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
5182739 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatt |
5182640 |
T |
|
| Q |
114 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
5182639 |
tccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgtttgatata |
5182540 |
T |
|
| Q |
214 |
tccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataag |
313 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||| |||| ||||||| ||||||| ||| ||||||| || |||||||| |||||||| | |
|
|
| T |
5182539 |
tccaaataattcatgttatgattatctatcaaccaacttgggaatgaaccaactaaattgtttctggagaggtccaagaatatcaaattatattgatatg |
5182440 |
T |
|
| Q |
314 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgttttttc |
412 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
5182439 |
aaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccactttgtcttttc |
5182340 |
T |
|
| Q |
413 |
agtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatg |
512 |
Q |
| |
|
|||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182339 |
agtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatgatccttgcatg |
5182243 |
T |
|
| Q |
513 |
taatttcca |
521 |
Q |
| |
|
||||||||| |
|
|
| T |
5182242 |
taatttcca |
5182234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 521
Target Start/End: Complemental strand, 5196139 - 5195628
Alignment:
| Q |
14 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
5196139 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttaccaattgatgaaggtatatt |
5196040 |
T |
|
| Q |
114 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| || | |||||||||| | | | |||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
5196039 |
tccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaaccactcaaattgttgtttgatata |
5195940 |
T |
|
| Q |
214 |
tccatataattaatgttatgattatgtatcaaccaa---cttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgat |
310 |
Q |
| |
|
|||| ||| | |||| || |||||||||||||||| |||||| ||||||| ||| ||||| | ||| ||| ||| | | |||||| ||||||| |
|
|
| T |
5195939 |
tccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagccatttatattgttgctggagaggaccaagtataccaaattatattgat |
5195840 |
T |
|
| Q |
311 |
aagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgtttt |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5195839 |
atgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttaggaaaccactttgtttt |
5195740 |
T |
|
| Q |
410 |
ttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgc |
509 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195739 |
ttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatgatccttgc |
5195640 |
T |
|
| Q |
510 |
atgtaatttcca |
521 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5195639 |
atgtaatttcca |
5195628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 5173400 - 5172905
Alignment:
| Q |
18 |
tgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttcct |
117 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
5173400 |
tgtggccagttgtttaggtaactcacctgagaaattattatgagagaggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttcct |
5173301 |
T |
|
| Q |
118 |
tcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatatatcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||||||||| ||| || || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
5173300 |
tcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatatatc------ttctggaagcaaaccactaaaattgttgtttgatagatcca |
5173207 |
T |
|
| Q |
218 |
tataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataagaaag |
317 |
Q |
| |
|
||| | ||| || ||||| |||||||||||||||| ||||||||| || ||||| | || ||||||| || |||||||| |||||||||||||| |
|
|
| T |
5173206 |
aatattgtatggcatcattatttatcaaccaacttgggagtgagccaacaatattgttgctagagaggtccatcagtatcaaattatattgataagaaag |
5173107 |
T |
|
| Q |
318 |
aaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgttttttcagtt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5173106 |
aaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccactttgttttttcagtt |
5173007 |
T |
|
| Q |
417 |
tcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaat |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | |||||||| | |||||||||||| || | | ||||||||||||||||||||||| |
|
|
| T |
5173006 |
tcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatgatccttgcatgtaat |
5172907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 108 - 521
Target Start/End: Original strand, 4856686 - 4857097
Alignment:
| Q |
108 |
tatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||| |||| |||||||||| | ||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
|
| Q |
208 |
gatatatccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtatt |
307 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||| |||||||| |||| ||||||| ||||||| ||| ||||||| || | |||||| |||| |
|
|
| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttgggaatgaaccaactaaattgtttctggagaggtccaagaataccaaattatatt |
4856885 |
T |
|
| Q |
308 |
gataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgt |
406 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
4856886 |
gatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccactttgt |
4856985 |
T |
|
| Q |
407 |
tttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatcct |
506 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4856986 |
cttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatgatcct |
4857082 |
T |
|
| Q |
507 |
tgcatgtaatttcca |
521 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4857083 |
tgcatgtaatttcca |
4857097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 518
Target Start/End: Original strand, 4842125 - 4842620
Alignment:
| Q |
21 |
ggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttccttca |
120 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4842125 |
ggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttca |
4842224 |
T |
|
| Q |
121 |
aagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatatatccatat |
220 |
Q |
| |
|
||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| ||||| || ||||| ||||| |||||||||||||||| ||||| || |
|
|
| T |
4842225 |
aagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaaccactaaaattgttgtttgatagatccaaat |
4842324 |
T |
|
| Q |
221 |
aattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataagaaagaaa |
320 |
Q |
| |
|
| | ||| | ||||| |||||||||||||||| |||||||| | ||||| | || ||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
4842325 |
attgtatgccaacattatttatcaaccaacttgggagtgagccaa---tattgttgctagagaggtccatcactatcaaattatattgataagaaagaaa |
4842421 |
T |
|
| Q |
321 |
agtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgttttttcagtttca |
419 |
Q |
| |
|
||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4842422 |
agtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccactttgttttttcagtttca |
4842521 |
T |
|
| Q |
420 |
atgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatgtaattt |
518 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||| | |||||||| | |||||||||||| || | | ||||||||||||||||||||||||| |
|
|
| T |
4842522 |
atgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatgatccttgcatgtaattt |
4842620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 521
Target Start/End: Complemental strand, 5214296 - 5213794
Alignment:
| Q |
14 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
5214296 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatt |
5214197 |
T |
|
| Q |
114 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaattgttgtttgatata |
213 |
Q |
| |
|
|||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| |||||||| || || ||||||||| ||||| |||||||| |
|
|
| T |
5214196 |
tccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttggaagaaaaccacttaaactgttgattgatata |
5214097 |
T |
|
| Q |
214 |
tccatataattaatgttatgattatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtccaccaacatcaaattgtattgataag |
313 |
Q |
| |
|
|||| ||| || || | | |||||| ||||| |||||| || | ||||| | |||||| | ||| ||||||| ||| |||||| | |||||||| | |
|
|
| T |
5214096 |
tccaaatatttcat---agaagaatgtatgaaccatcttgggaataaaccaaccaatttgttgctggataggtccatcaatatcaaactatattgatatg |
5214000 |
T |
|
| Q |
314 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-ttgttttttc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||| |
|
|
| T |
5213999 |
aaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatttgggtaaccactttgtcttttc |
5213900 |
T |
|
| Q |
413 |
agtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatgatccttgcatg |
512 |
Q |
| |
|
||||||||||| | | ||| ||| ||| ||||||||||||||| | | |||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5213899 |
agtttcaatgtttgcaccaatgc---tttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatccttgcatg |
5213803 |
T |
|
| Q |
513 |
taatttcca |
521 |
Q |
| |
|
||||||||| |
|
|
| T |
5213802 |
taatttcca |
5213794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 92 - 431
Target Start/End: Complemental strand, 7142598 - 7142256
Alignment:
| Q |
92 |
taccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaaccc |
191 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||||||||||| | | |||| |||||||||| | ||| ||||| || ||||| || |
|
|
| T |
7142598 |
taccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaagcaaacc |
7142499 |
T |
|
| Q |
192 |
acttaaattgttgtttgatatatccatataattaatgttatgattatgtatcaaccaa---cttggggatgagccaactattttgtttccggaaaggtcc |
288 |
Q |
| |
|
|||||||||||||||||||||||||| || | || || |||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||| |
|
|
| T |
7142498 |
acttaaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagccaactatattgtttctggagaggtcc |
7142399 |
T |
|
| Q |
289 |
accaacatcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaa |
388 |
Q |
| |
|
| || |||||| | |||||| |||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| || |||| | | ||||| |
|
|
| T |
7142398 |
aagaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaa |
7142300 |
T |
|
| Q |
389 |
atttaggaaaccac-ttgttttttcagtttcaatgtgtactcca |
431 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
7142299 |
atctaggaaaccactttgtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 5203324 - 5203271
Alignment:
| Q |
234 |
attatgtatcaaccaacttggggatgagccaactattttgtttccggaaaggtc |
287 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
5203324 |
attatgtatcaaccaacttgggaatgagccaactattttgtttctggtaaggtc |
5203271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 5195578 - 5195519
Alignment:
| Q |
514 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5195578 |
aatttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgctta |
5195519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 5159934 - 5159877
Alignment:
| Q |
516 |
tttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5159934 |
tttccactgaacagattattactaagttcaagaactctgaggtttgttaagttgctta |
5159877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 5202885 - 5202773
Alignment:
| Q |
403 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga |
502 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| | | || |||||||||||| || |||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
5202885 |
ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg |
5202789 |
T |
|
| Q |
503 |
tccttgcatgtaattt |
518 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
5202788 |
tccttgcgtgtgattt |
5202773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 573
Target Start/End: Original strand, 4842673 - 4842732
Alignment:
| Q |
514 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
4842673 |
aatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttactta |
4842732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4856621 - 4856676
Alignment:
| Q |
17 |
ctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaag |
72 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4856621 |
ctgtggccaattgttcaggtaactcacctgagaaatgattctgagagaggtccaag |
4856676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 5172852 - 5172793
Alignment:
| Q |
514 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
5172852 |
aatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttactta |
5172793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 5182184 - 5182125
Alignment:
| Q |
514 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
5182184 |
aatttccactgaacagattattactaagttcaagaactctaaggtttgttaagttgctta |
5182125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 5213744 - 5213685
Alignment:
| Q |
514 |
aatttccactgaacaaattatcgctaagatcaagaagtctgaggtttgttaagttgctta |
573 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
5213744 |
aatttccactgaacaaattatagctaagttcaagaacattcaggtttgttaagttgctta |
5213685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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