View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12836_low_7 (Length: 497)
Name: NF12836_low_7
Description: NF12836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12836_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 42337143 - 42336682
Alignment:
| Q |
15 |
agagacgggacacttaacaaggaagtagagataatgaactaatattgttccaagagttttctctattcatttatcaacaatgatgtgtggtacgagacga |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42337143 |
agagacgggacacttaacaaggaagttgagataatgaactaatattgttccaagagttttctctattcatttatcaacaatgatgtgtggcgcgagacga |
42337044 |
T |
|
| Q |
115 |
gacgaactatttacatttgttaatcatgcacaaccgctctgtgtattttggccacgtgttggctttgtatgcttttccagcttttttgttggacaactta |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42337043 |
gacgaattatttacatttgttaatcatgcacaaccgctctgtgtattttggccatgtgttggctttgtatgcttttccagcttttttgttggacaactta |
42336944 |
T |
|
| Q |
215 |
tttctttgtttgcttccgacaaaaattatatcgtgccaaatagcactgcatataagaattatatttggccctctccnnnnnnncgaattataattggatg |
314 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42336943 |
tttctctgtacgcttccgacaaaaattatatcgtgccaaatagcactgcatataagaattatatttggccctctccaaaaaaacgaattataattggatg |
42336844 |
T |
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| Q |
315 |
tatgtgtttcatgaggtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttttatttttgg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42336843 |
tatgtgtttcatgaggtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttt--attttgg |
42336746 |
T |
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| Q |
415 |
ggtatacttcctttaataataattattctaatacaccctcgtagtcgagactatatctaagatc |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42336745 |
ggtatacttcctttaataataattattctaatacacccttgtagtcgagactatatctaagatc |
42336682 |
T |
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