View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_high_10 (Length: 217)
Name: NF12837_high_10
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38041095 - 38041308
Alignment:
| Q |
1 |
catgtcttttataacatgctgctgtctgctgatacgcatataacatcacttaatttaaacttaaaatacatatgtttgcaaacgtagttcacgaagttgt |
100 |
Q |
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| T |
38041095 |
catgtcttttataacatgctgttgtctgttgatacgcatataacatcacttaatttgaacttaaaatacatatgtttgcaaacgtagttcacgaagttgt |
38041194 |
T |
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| Q |
101 |
cacac-aaatttcacattatcaccaggtat----atgtgacatttggcgagcgaaattgttaatgccatacaatagataaaaaatcaaccataattttca |
195 |
Q |
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| T |
38041195 |
cacacaaaaaatcacatgatcaccaggtatatagatgtgacatttggcaagcgaaattgttaatgccatacaatagataaaaaatcaaccataattttca |
38041294 |
T |
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| Q |
196 |
ccaaagtctgtgct |
209 |
Q |
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||||||| |||||| |
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| T |
38041295 |
ccaaagtatgtgct |
38041308 |
T |
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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 31837474 - 31837637
Alignment:
| Q |
32 |
atacgcatataacatcacttaattta-aacttaaaatacatatgtttgcaaacgtagttcacgaagttgtcacacaaatttcacattatcaccaggtata |
130 |
Q |
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|||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| || |
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| T |
31837474 |
atacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgtagttcacgaagtgatctcacaaatttcacatta-------gt--- |
31837563 |
T |
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| Q |
131 |
tgtgacatttggcgagcgaaattg-ttaatgccatacaatagat-aaaaaatcaaccataattttcaccaaagt |
202 |
Q |
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| T |
31837564 |
tgtgacatttggcgagcgaaattgtttaataccatacaatagataaaaaaatcaaccgtaattttcaccaaagt |
31837637 |
T |
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