View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_high_3 (Length: 402)
Name: NF12837_high_3
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 25 - 376
Target Start/End: Original strand, 9085490 - 9085831
Alignment:
| Q |
25 |
cttaacagaaccattatagagttcagatacttcttgtttccttgacaaaatatcattatatcatcatcattgagagaatgagtaggaatgatgggtgcac |
124 |
Q |
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| T |
9085490 |
cttaacagaaccattatagagttcagatacttcttgtttccttgacaaaatatcattatatcatcatcattgagagaatgagtaggaatg----gtgcac |
9085585 |
T |
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| Q |
125 |
cctaagactaaacattggcttgataaacccctgattagctcttacaaataaaatnnnnnnnctgattaattagctttcattgtcaaagctctactaagca |
224 |
Q |
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| T |
9085586 |
cctaagactaaacattggcttgataaacccctgattagctcttacaaataaaa------aactgattaattagctttcattgtcaaagctctaccaagca |
9085679 |
T |
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| Q |
225 |
cttcctcaaccaaacaaaatcagagaaacacttatatgggaacaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatcaatttaatt |
324 |
Q |
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| T |
9085680 |
cttcctcaaccaaacaaaatcagagaaacaattatatgggaacaaccacaaataaaatacatttaggtgcacaaacataaaagtacttatcaatttaatt |
9085779 |
T |
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| Q |
325 |
atttaaaataacatagtattaaagtgtttcttcttttaccttttccccattt |
376 |
Q |
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| T |
9085780 |
atttaaaataacatagtattaaagtgtttcttcttttaccttttccccattt |
9085831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 364
Target Start/End: Original strand, 23951062 - 23951176
Alignment:
| Q |
247 |
gagaaacacttatatgggaacaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatcaatttaattatttaaaataacatagtattaa |
346 |
Q |
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| T |
23951062 |
gagaaatatttatatagaaacaactacaaataaaatacatttagat--acacatataaaagtatttatca-tttaatcatttaaaataacatattattta |
23951158 |
T |
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| Q |
347 |
agtgtttcttcttttacc |
364 |
Q |
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| T |
23951159 |
agtatttcttcttttacc |
23951176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 37644851 - 37644801
Alignment:
| Q |
266 |
acaaccacaaataaaatacatttaggtgcacacacatgaaagtacttatca |
316 |
Q |
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| T |
37644851 |
acaaccacaaataaaatacatttatgcgcgcacatataaaagtacttatca |
37644801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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