View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_high_6 (Length: 315)
Name: NF12837_high_6
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_high_6 |
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| [»] chr4 (11 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 55636149 - 55636456
Alignment:
| Q |
8 |
tagcataggaatcaattttgtttttagagggggtgggggagttttgttttgggaagaacgaaaagttatacttgcttattaccatgaatctagtctcttc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55636149 |
tagcctaggaatcaattttgtttttagagggggtgggggagttttgttttgggaagaacgaaaagttatacttgcttattaccatgaatctagtctcttc |
55636248 |
T |
|
| Q |
108 |
tcactgcttgtattatgtcatctgatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccg |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55636249 |
tcactgcttgtattatgtcatctcatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccg |
55636348 |
T |
|
| Q |
208 |
tgcattttgagcctgttgacaaataatcacacgaatatcatcaagaaataagcttgtcgtactatatcatgcattacagctggacacagagagcaaatac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55636349 |
tgcattttgagcctgttgacaaataatcacacgaatatcatcaagaaagaagcttgtcgtactatatcatgcattacagctggacacagagagcaaatac |
55636448 |
T |
|
| Q |
308 |
aggcaatc |
315 |
Q |
| |
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|||||||| |
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| T |
55636449 |
aggcaatc |
55636456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 52985034 - 52984887
Alignment:
| Q |
91 |
atgaatctagtctcttctcactgcttgtattatgtcatctgatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatca |
190 |
Q |
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| T |
52985034 |
atgaatctagtctcttctcgccccttgtattttttcatctcatgtgtcacctgtgagaattacctgatttggtgggactctttttgtcaggctattatca |
52984935 |
T |
|
| Q |
191 |
atcatggttcactcccgtgcattttgagcctgttgacaaataatcaca |
238 |
Q |
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| T |
52984934 |
atcatggttcactctcatgccttttgagcctgctgacccataatcaca |
52984887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 55664748 - 55664639
Alignment:
| Q |
117 |
gtattatgtcatctgatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttg |
216 |
Q |
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||||| |||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
55664748 |
gtattttgtcatctcatgtgtcac--gtgagaataacttgatttggtgagactctttttgtcaggctattatcaatcatggttcactcccatgccttttg |
55664651 |
T |
|
| Q |
217 |
agcctgttgaca |
228 |
Q |
| |
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|| ||||||||| |
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| T |
55664650 |
agtctgttgaca |
55664639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 310
Target Start/End: Complemental strand, 54861547 - 54861394
Alignment:
| Q |
157 |
attttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttgagcctgttgacaaataatcacacgaatatcatcaagaaat |
256 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | || ||||| ||| | || |||||| |
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| T |
54861547 |
atttggtgggactctttttgtcaggctattatcaatcatggttcactcccatgccttttgagcctgttgaccagtagtcacaagaaaagtattaagaaag |
54861448 |
T |
|
| Q |
257 |
aagcttgtcgtactatatcatgcattacagctggacacagagagcaaatacagg |
310 |
Q |
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||| ||| | ||| | ||| ||||||||||||| |||||||||| ||||||| |
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| T |
54861447 |
aagtttgctggactgtgtcaaacattacagctggaaacagagagcagatacagg |
54861394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 310
Target Start/End: Original strand, 51315967 - 51316159
Alignment:
| Q |
118 |
tattatgtcatctgatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttga |
217 |
Q |
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||||||||||||| ||||| ||||||| ||||||| |||||| ||||| |||||||||||||| | ||||||||||||||||||||| ||| |||||| |
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| T |
51315967 |
tattatgtcatctcatgtgtcacctgtttgaataacctgatttggtggggctctttttgtcaggttgttatcaatcatggttcactccaatgccttttga |
51316066 |
T |
|
| Q |
218 |
gcctgttgacaaataatcacacgaatatcatcaagaaataagcttgtcgtactatatcatgcattacagctggacacagagagcaaatacagg |
310 |
Q |
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|||||||||| || |||||| || | || ||| || ||||||| | ||| ||||| |||||||||||| |||||||||| ||||||| |
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| T |
51316067 |
gcctgttgacccatgatcacaacaaaagtattaagcaagaagcttgcaggactgtatcaaacattacagctggtaacagagagcagatacagg |
51316159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 55658549 - 55658410
Alignment:
| Q |
91 |
atgaatctagtctcttctcactgcttgtattat-gtcatctga---tgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctatt |
186 |
Q |
| |
|
||||||||||||||||||||| ||||| || | ||||||| | |||| ||||||||||||| ||||||||| || ||||||| |||||||||||||| |
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| T |
55658549 |
atgaatctagtctcttctcaccccttgtctttttgtcatctcaatatgtgtcacctgtgagaattacttgatttggtaggactctatttgtcaggctatt |
55658450 |
T |
|
| Q |
187 |
atcaatcatggttcactcccgtgcattttgagcctgttga |
226 |
Q |
| |
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||||||||||||| |||||| | | ||||||||||||||| |
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| T |
55658449 |
atcaatcatggtttactcccattccttttgagcctgttga |
55658410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 55620154 - 55620060
Alignment:
| Q |
132 |
atgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttgagcctgttga |
226 |
Q |
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||||| ||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| | | ||||||||||||||| |
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| T |
55620154 |
atgtgtcacctgtgagaattacttgatttggtaggactctatttgtcaggctattatcaatcatggtttactcccattccttttgagcctgttga |
55620060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 55627458 - 55627364
Alignment:
| Q |
132 |
atgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttgagcctgttga |
226 |
Q |
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|
||||| ||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| | | ||||||||||||||| |
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| T |
55627458 |
atgtgtcacctgtgagaattacttgatttggtaggactctatttgtcaggctattatcaatcatggtttactcccattccttttgagcctgttga |
55627364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 54628043 - 54628128
Alignment:
| Q |
142 |
tgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatcatggttcactcccgtgcattttgagcctgttgac |
227 |
Q |
| |
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||||||||| || |||||| || ||| |||||||||||||||||| |||||||||||| |||||| || |||||||||||||||| |
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| T |
54628043 |
tgtgagaattacctgatttggtaggattctttttgtcaggctattgtcaatcatggtttactcccatgtcttttgagcctgttgac |
54628128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 3671616 - 3671556
Alignment:
| Q |
177 |
tcaggctattatcaatcatggttcactcccgtgcattttgagcctgttgacaaataatcac |
237 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||| |||||||||||||||| |||||||| |
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|
| T |
3671616 |
tcaggctattgtcgatcatggttcactcccatgccttttgagcctgttgacccataatcac |
3671556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 55658655 - 55658585
Alignment:
| Q |
13 |
taggaatcaattttgtttttagagggggtggggg-agttttgttttgggaagaacgaaaagttatacttgc |
82 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||| | |||||| ||||| |||||||| |||||||||||| |
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| T |
55658655 |
taggaatcaatttggttttttgtgggggtggggggatttttgtcttgggcagaacgaatagttatacttgc |
55658585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 315
Target Start/End: Original strand, 9890561 - 9890781
Alignment:
| Q |
96 |
tctagtctcttctcactgcttgtattatgtca-tctgatgtgccacctgtgagaataacttgattttgtgggactctttttgtcaggctattatcaatca |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||| || |||||||||||||||||||||||||||||||| || |||| |
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|
| T |
9890561 |
tctagtctcttctcaccccttgtattatgtcaatctcatgtgtcacttgtgagaattacctgattttgtgggactctttttgtcaggctattctcgatca |
9890660 |
T |
|
| Q |
195 |
tggttcactcccgtgcattttgagcctgttgacaaataatcacacgaatatcatcaagaaataagcttgtcgtactatatcatgcattacagctggacac |
294 |
Q |
| |
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|||||||||||| ||| |||||||||||||||| |||||||| | | | || | |||| ||||||| | ||||||||| ||||||||||||| || |
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| T |
9890661 |
tggttcactcccatgccttttgagcctgttgacccataatcacgaggaaactattaggaaagaagcttgctggactatatcaaacattacagctggaaac |
9890760 |
T |
|
| Q |
295 |
agagagcaaatacaggcaatc |
315 |
Q |
| |
|
|||||||| ||||||| |||| |
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| T |
9890761 |
agagagcagatacaggtaatc |
9890781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 310
Target Start/End: Original strand, 13402604 - 13402829
Alignment:
| Q |
83 |
ttattaccatgaatctagtctcttctcactgcttgtattatgtcatctgatgtgccacctgtgagaataacttgattttgt-gggactctttttgtcagg |
181 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | |||| || ||||||| ||| ||||| ||||| | | ||||||||| |||||||||||||||||| |
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| T |
13402604 |
ttattaccattaatctagtttcttctcac-gtttgtttt--gtcatctcatgcatcacctttgagagttatctgattttgttgggactctttttgtcagg |
13402700 |
T |
|
| Q |
182 |
ctattatcaatcatggttcactcccgtgcattttgagcctgttgacaaataatcacacgaatatcatcaagaaataagcttgtcgtactatatcatgcat |
281 |
Q |
| |
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||||||| ||||||||||||||| || |||||||||||||||| ||||||||| ||| | || |||||| ||||||| | ||||||||| ||| |
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| T |
13402701 |
ctattattggtcatggttcactcccatgtcttttgagcctgttgacccataatcacaagaaaagtattaagaaagaagcttgctggactatatcaaacat |
13402800 |
T |
|
| Q |
282 |
tacagctggacacagagagcaaatacagg |
310 |
Q |
| |
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|||||||||| ||| |||||| ||||||| |
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| T |
13402801 |
tacagctggaaacaaagagcagatacagg |
13402829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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