View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_low_1 (Length: 485)
Name: NF12837_low_1
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 36935836 - 36936294
Alignment:
| Q |
18 |
atcagtattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccatt |
117 |
Q |
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| T |
36935836 |
atcaatattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccatt |
36935935 |
T |
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| Q |
118 |
ttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatggtgttta |
217 |
Q |
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| T |
36935936 |
ttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatggtgttta |
36936035 |
T |
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| Q |
218 |
atcttgc--------tcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaa |
309 |
Q |
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| T |
36936036 |
atcttgcattcttgctcggttatgaattattt-ctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaa |
36936134 |
T |
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| Q |
310 |
gagatcgaggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataa |
409 |
Q |
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| T |
36936135 |
gagatcgaggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataa |
36936234 |
T |
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| Q |
410 |
caacaaactcgacatagtctaaactaaagaccaccaaaagagaaataaaacagataaaat |
469 |
Q |
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| T |
36936235 |
caacaaactcgacatagtctaaactaaagaccaccaaaagagaaataaaacagataaaat |
36936294 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
321 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
373 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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