View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_low_2 (Length: 482)
Name: NF12837_low_2
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 21773527 - 21773989
Alignment:
| Q |
7 |
caaagaagctattgagctttacgacaacatgctctttgagggtgttttaccggatgcttacaccttctccgcaatctttaaggctttttcagaaatggga |
106 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21773527 |
caaagaagctattgagctttacagcaacatgctctttgagggtgttttaccggatgcttacaccttctccgcaatctttaaggctttttcagaaatggga |
21773626 |
T |
|
| Q |
107 |
gtttcacgtgaggggcagaaagcgcatgggttggctgtggttttgggttttgaggtgtcggatgggtttgttgcaactggcattgttgatatgtacgcga |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21773627 |
gtttcacgtgaggggcagaaagcgcatgggttggctgtggttttgggttttgaggtgtcggatgggtttgttgcaaccggcattgttgatatgtacgcga |
21773726 |
T |
|
| Q |
207 |
aatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttgattgttgggtataatcaacacgg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21773727 |
aatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttgattgttgggtataatcaacacgg |
21773826 |
T |
|
| Q |
307 |
tcttgatggtgaagctttggaggtttttgaagataaggtcggtagtagaattaagccgaatgaatatactttggcgagtgttttggttagttgtggtaat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21773827 |
tcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgagtgttttggttagttgtggtaat |
21773926 |
T |
|
| Q |
407 |
ctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatct |
469 |
Q |
| |
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| T |
21773927 |
ctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtatggtttggaatct |
21773989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 13515374 - 13514912
Alignment:
| Q |
7 |
caaagaagctattgagctttacgacaacatgctctttgagggtgttttaccggatgcttacaccttctccgcaatctttaaggctttttcagaaatggga |
106 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515374 |
caaagaagctatcgagctttacgacaacatgctctttgagggtgttttaccggatgcttacaccttctccgcaatctttaaggctttttcagaaatggga |
13515275 |
T |
|
| Q |
107 |
gtttcacgtgaggggcagaaagcgcatgggttggctgtggttttgggttttgaggtgtcggatgggtttgttgcaactggcattgttgatatgtacgcga |
206 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
13515274 |
gtttcacgtgaggggcagaaagcacatgggttggctgtggttttgggttttgaggtgtcggatgggtttgttgcaaccggcattgttgatatgtatgcga |
13515175 |
T |
|
| Q |
207 |
aatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttgattgttgggtataatcaacacgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13515174 |
aatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttgattgttgggtataatcaacgcgg |
13515075 |
T |
|
| Q |
307 |
tcttgatggtgaagctttggaggtttttgaagataaggtcggtagtagaattaagccgaatgaatatactttggcgagtgttttggttagttgtggtaat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515074 |
tcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgagtgttttggttagttgtggtaat |
13514975 |
T |
|
| Q |
407 |
ctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatct |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13514974 |
ctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatct |
13514912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 469
Target Start/End: Complemental strand, 13562275 - 13561813
Alignment:
| Q |
7 |
caaagaagctattgagctttacgacaacatgctctttgagggtgttttaccggatgcttacaccttctccgcaatctttaaggctttttcagaaatggga |
106 |
Q |
| |
|
||||||| | |||||||| ||| ||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13562275 |
caaagaacccattgagctctacaacaacttgctctttgacggtgttttactggatgcttacaccttctccgcgatctttaaggctttttcagaaatggga |
13562176 |
T |
|
| Q |
107 |
gtttcacgtgaggggcagaaagcgcatgggttggctgtggttttgggttttgaggtgtcggatgggtttgttgcaactggcattgttgatatgtacgcga |
206 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
13562175 |
gttttacgtgaggggcagaaagcgcatgggttggctgtggttttgggttttgaggtgtccgatgggtttgttgcaaccggcattgttgatatgtatacga |
13562076 |
T |
|
| Q |
207 |
aatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttgattgttgggtataatcaacacgg |
306 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || || |
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| T |
13562075 |
aatttggtaaaatgaaggatgcccaatttgtgtttgaccgtgttttggataaagatgttgtcttattcactgcattgattgttgggtataatcagcatgg |
13561976 |
T |
|
| Q |
307 |
tcttgatggtgaagctttggaggtttttgaagataaggtcggtagtagaattaagccgaatgaatatactttggcgagtgttttggttagttgtggtaat |
406 |
Q |
| |
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|||||||||||||||||| ||||||||||| || | ||| ||||| ||| ||||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
13561975 |
tcttgatggtgaagctttagaggtttttgaggaaatggttggtaggagagttaagcctaatgaatatactttagcaagtgttttggttagttgtggtaat |
13561876 |
T |
|
| Q |
407 |
ctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatct |
469 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
13561875 |
ctaggagatttagttaatggtaaactgattcatggtcttgttgttaagtctggtttggaatct |
13561813 |
T |
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