View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_low_4 (Length: 400)
Name: NF12837_low_4
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 42894241 - 42894636
Alignment:
| Q |
1 |
acaacaatttgaaattgtttgtgtgattaaaatgtcatgggttagtttctggaatcaacatattgttaaatacaatgtaagcatgcctataatagatcta |
100 |
Q |
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| T |
42894241 |
acaacaatttgaaattgtttgtgtgattagaatgtcatgggttagtttctggaatcaacatattgttaaatacaatgtaagcatgcctataatagatcta |
42894340 |
T |
|
| Q |
101 |
ccatgccgtgatatttaatcctaccaatatcaattttcagcttttgtatgtgcaatttatttacccaacatgtgcaacactgactaacctata-tttttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42894341 |
ccatgccgtgatatttaatcctaccaatatcaattttcagcttttgtatgtgcaatttatttacccaacatgtgcaacactgactaacctatattttttt |
42894440 |
T |
|
| Q |
200 |
ctccaaaagaggttttatgacattgtcatagatcaaactagcatgacctcaaactgtcagatgtcattctatacaggccacccatccagtgcaaaaaata |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
42894441 |
ctccaaaagaggttttatgacattgtcatagatcaaactagcatgacctcaaactgtcagatgtcattctatataggccgcccatccagtgcaaaaaata |
42894540 |
T |
|
| Q |
300 |
aaagcactacatgaatagattttaaaaccggtcactgaaaaataatgagatggacttacctctgctttgtttttatccttgctagtctctgcttct |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42894541 |
aaagcactacatgaatagattttaaaaccggtcactgaaaaataatgagatggacttacctctgctttgtttttatccttgctagtctctggttct |
42894636 |
T |
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